Borrelia parkeri: X966_01140
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Entry
X966_01140 CDS
T03987
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bpak
Borrelia parkeri
Pathway
bpak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X966_01140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpak03021
]
X966_01140
03019 Messenger RNA biogenesis [BR:
bpak03019
]
X966_01140
Transcription machinery [BR:
bpak03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
X966_01140
Messenger RNA biogenesis [BR:
bpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
X966_01140
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA
Spore_III_AA
AAA_22
AAA_25
AAA_24
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AHE62563
LinkDB
All DBs
Position
complement(234068..235612)
Genome browser
AA seq
514 aa
AA seq
DB search
MDKKCAEFDLEDEMKRLNSSKELKIEDNSKKKIVKVVTKKESVASGLKNSNIDKLRESHG
VSSGFDYDISDPDLENSIKTLEQSNIINFLGGKDFIVIDSLYDKPITEIRKVVEGLGTNH
TIAVTMKKTELIFLLVKILTEHNINVLFTGVLDVLSDGYGFLRTASNSYLSGGNDVYVSP
SQIRLFNLRTGDILYGQIRSPRDGERFFAMIKIKSINDQDPTFAQNRIPFDNLTPLYPSS
KLNLEYENCNISTRLINLFSPIGKGQRALIVSPPKAGKTTLLQKIANAITTNYPDIVLMI
LLIDERPEEVTDMIRGVKGEVIASNFDEQASRHVQVAEMVIEKAKRLVENKKDVVILLDS
ITRLARAYNQTMPTSGKILSGGVDSNALHKPKRFFGSARNIEEGGSLTIIATALVDTGSK
MDEVIFEEFKSTGNMELILDRSLADRRLFPAINIKKSGTRKEELLLSEEERSKILLIRKI
LGGVDDYEGVEALVEKMKKSKNNEIFLKTMSNGD
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaatgtgcggaatttgatttagaggatgaaatgaagcgtttaaattcttct
aaagaattaaagattgaggataattctaagaaaaaaatagttaaagttgtcactaaaaaa
gaatctgttgctagtggacttaaaaactctaatattgataaattgagagaatctcatgga
gtctcgtcaggttttgattatgatatatctgatccagatttagaaaatagtattaaaact
cttgagcaaagcaacattattaattttttaggtggtaaagattttatcgttattgatagt
ctgtatgataaacccattaccgaaatcaggaaagttgttgagggacttggtactaatcat
actattgcggtaacaatgaagaagacagaattaatatttttacttgttaagatattaact
gaacataatattaatgttttatttactggcgttcttgatgttttaagtgatgggtacgga
tttttgcgtacagcatctaattcttatctctcaggaggtaatgatgtttatgtttcaccg
tctcagattagactttttaatttaaggacaggtgatattttatatgggcagattaggtct
ccaagggatggcgagagattttttgcaatgattaaaattaaaagcattaatgaccaggac
cctacatttgcacaaaatagaataccttttgataatttaacacctttatatcctagttca
aagttgaatcttgaatatgaaaattgtaatatttccactaggcttattaatcttttttct
cctattggaaaagggcaaagagcattaatagtatcacctccaaaggctgggaagactact
ttgcttcaaaaaatagccaatgcaattactactaattatccagacattgttttaatgatt
ttacttattgatgagagacctgaagaagtgactgacatgattcggggtgttaagggtgag
gtcattgcatctaattttgatgagcaggctagtaggcacgtgcaggttgcagagatggtt
attgaaaaggcaaaaagacttgttgagaataaaaaggatgttgttattcttttagattct
attacaagacttgcaagggcttataatcagactatgccaacttctggtaagatactctca
ggtggagttgattctaatgctttacataaaccaaaaaggttttttggttctgctagaaat
attgaagaaggtggcagtcttactattatagctacagctttagttgatactggaagtaag
atggatgaagtcatatttgaggaatttaaaagtactggtaatatggagttaattcttgat
aggagtttggcagatagaaggctttttcctgctattaatattaagaaatcagggacaaga
aaagaagaattacttttaagtgaagaggagcgttctaaaattttgcttattagaaaaatt
ttaggtggtgttgatgattatgaaggtgttgaagctttagttgaaaagatgaaaaaaagt
aagaacaatgaaattttcctaaagaccatgagtaatggagattag
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