Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110173192
Help
Entry
110173192 CDS
T05002
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec04510
Focal adhesion
bpec04512
ECM-receptor interaction
bpec04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110173192 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110173192 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110173192 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bpec04147
]
110173192 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
bpec00536
]
110173192 (col4a1)
Exosome [BR:
bpec04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110173192 (col4a1)
Glycosaminoglycan binding proteins [BR:
bpec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110173192 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110173192
NCBI-ProteinID:
XP_020794840
LinkDB
All DBs
Position
Unknown
AA seq
1637 aa
AA seq
DB search
MLLPCAALVILAFSFDLSNAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMHGPE
GPAGPMGPKGDTGELGSPGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGAPGIPGCNGTK
GEIGRDGTPGFPGLQGPPGIPGIPGMKGDPGGVLGIVPLKGDRGFPGTPGLPGPTGPPGR
TGPSGPRGDQGPKGDPGPPGLPGEKADKLSFVSQKGDKGDRGLRGPPGPPGPYTGLEGST
TVYIPGPQGNRGFPGEKGEKGFCIPHLDGVKGEAGPPGSRGKPGKDGDPGLKGEKGFTGA
PGRDGLSGEKGERGPPGYGSGAPGPPGPRGLPGLEGEKGFPGPQGEPGPPGRHIEGPRGE
KGLKGYPGEKGLPGLDGVSMIGPPGEPGPRGETGAPGPIGPIECNIQKGPPGPPGPPGLQ
GELGQKGDKGDTCVLCEGQVAPGLPGPIGQKGERGPPGAVGGKGEKGEPGVTGTPGRPGT
QGVPGLRGSPGAVGEPGDIIVAPGLKGEKGLPGTPGSPGRPGLDGLPGRDGLPGTPGLKG
EPAKEGIKGERGPDGDPGLIGPPGERGPPGVPGFGRPGEPGEKGTSGNPGLPGAPGPPGS
KGEPGQGISTPGPQGAPGPRGEPGLPGLQGDRGPQGDQGAPGFPGQKGDPGSPGIGMPGP
TGAKGISGIPGAPGIPGEPGKPGRDGLTGQPGSPGQKGEPGRGLPGPKGSQGPAGFPGFQ
GEKGSNGLPGIPGREGPTGPPGPQGIKGDVGPPGPPGQLGTPGPPGKGTPGAPGPQGPPG
EPGPSGREGVKGEKGFPGPPGLDMPGPQGEKGAPGFPGSPGSKGLPGPPGLTGRDGLPGS
QGSKGEMGVIGTPGVPGFPGSPGVRGSPGLRGDPGFTGPRGDIGEPGPKGERGEQGLQGP
PGNMSVVDMEHMKGDKGDPGDPGNPGASGPKGIRGMPGDPGMPGKDGEPGLPGHSGEKGD
QGIPGEPGSIGTPGQKGTVGEMGIPGPVGPKGTKGDVGTPGHPGFRGQDGQKGDEGVPGE
PGIGVPGHPGEKGPPGQPGFPGIAGEKGQKGQMGMPGQPGLQGTKGEKGTTGFPGQPGIP
GEKGTSGLPGSQGETGLDGRPGEPGLLGPPGPPGEKGDPGVDGIPGSSGERGEPGTPGQG
FPGKPGAAGIKGDKGSPGFPGTPGHPGVPGVKGDKGFQGPLGPQGEPGERGLPGVSLEGP
KGDKGDSGQPGDPGPPGVPGITGVPGRDGLKGDKGDQGRPGFQGETGPKGDFGTPGLPGQ
PGLPGVDGHKGERGQQGAPGFRGEKGPVGEIGYKGELGDSGFPGDKGNQGPPGPPGPHTF
IKGDMGPPGSQGFPGPKGSIGNIGPKGLQGITGIPGPKGEDGLPGYNGQPGAKGEPGLPG
PQGTRGFPGPPGPDGVPGQVGPPGPSSMYHGFLVTRHSQSVEVPVCPEGTSPIYDGYSLL
YVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMSMA
PITGQSIKPFISRCTVCEAPAMVIAVHSQTIMIPPCPNGWDSLWIGYSFVMHTSAGAEGS
GQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFTKPVPTTLKAGS
LRTHISRCQVCLKRTLA
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgctgctaccgtgcgctgccctggtcatcctggctttcagctttgatctctcaaacgca
gagggctgtgggacatcttgtggaaaatgtgactgcagtggtgtaaaaggagcaaagggt
gaacgtgggtttcctggacttcagggtaacatgggttttccaggaatgcatggacctgag
gggccagcagggccaatgggcccaaagggagatactggcgagctgggatcccctggactt
aaaggagttcgaggccctcctggtttaccaggttttccagggaaccctggattgccaggt
attaatggaaatgatggcccacccggtgccccaggtatcccaggatgcaatgggacaaaa
ggagaaataggcagagatggtacccctggttttcctggacttcaaggacctccgggtatc
ccaggaataccaggaatgaagggcgaccctggtggtgttctcgggatagttccgctcaaa
ggggacagaggattccctggtactcctggccttcctggccctacgggaccacctggacgc
actggacccagtggacctcgaggggatcaaggaccaaaaggtgatcctggccctcccggt
ctcccaggagaaaaagcagacaagctgtcgtttgtgagtcagaaaggagacaagggtgac
cggggactgcgtggccctcctggcccaccaggcccatacactggtctcgaaggatctacc
acagtctacattcctggtccacagggcaacaggggattcccaggagagaaaggagagaag
ggcttctgtataccacatcttgatggggtcaaaggtgaagctggcccacctggatcaagg
ggaaaacctggcaaagatggagatcctgggttaaagggagaaaaaggttttaccggagct
cctggacgagatggcttatcgggtgaaaagggagagagaggacccccaggttatggtagt
ggagctcctggccctccagggcctcgtggtctcccaggactggaaggagagaaaggtttt
cctggtccccaaggagaacctggcccgccaggacgtcacattgagggaccaagaggagag
aagggtcttaagggatatcctggtgaaaaaggactcccaggattagatggagtatctatg
attgggcctcccggagaaccaggaccacgtggagaaactggagctcctggacctataggt
cctatagagtgcaacatccaaaaggggcctccaggcccacctggacccccaggtctgcag
ggagagctgggacagaaaggtgacaaaggagatacttgtgtcctgtgtgagggtcaggtg
gcccctggtttaccaggccctattggccagaaaggagagcgaggacctcctggtgcagtt
ggtggcaaaggtgaaaagggtgaacctggagtgactggaacccctggcagacctggaacc
caaggcgtccctggattaagagggtctcctggtgctgtcggtgaacctggggacatcatt
gtggctccgggtctgaagggagagaagggactgccaggtacccctggctctccaggaagg
cctgggcttgacggactacctggtcgagatggcctgccagggacacctggtctcaaagga
gaacctgctaaagaaggcatcaagggtgagcgaggaccagatggagaccctggtcttatt
ggacctcctggggagagaggtccacctggagtcccagggtttggccgtccaggtgaacct
ggagaaaagggaacttcaggcaatccaggtcttcctggagctcctggaccacctggtagc
aaaggtgagccaggccagggcataagtaccccaggacctcaaggtgctccagggccacgt
ggagaacctggtttacctggacttcaaggggacaggggacctcaaggagaccaaggggca
ccaggtttccctggtcaaaagggtgatccaggatctccaggaattggaatgcctggaccc
actggtgccaaaggaatcagtggaattccaggagctccaggaataccaggagaaccagga
aaaccaggtcgtgatggtcttacgggacaaccaggttcaccaggtcaaaagggtgaacca
ggccgtggtctgccagggcctaaaggttctcagggtcccgctggattccctggtttccaa
ggtgagaaaggtagtaatggacttcccggcatccctggaagagagggtccaactggtcca
ccaggccctcagggaattaaaggtgatgtgggtccccctggtccacctggacagttgggg
acacctggtccacctggcaaaggaacccctggagcccctggaccacaaggaccacctgga
gagccaggcccatcaggtagagaaggagttaaaggggaaaagggcttcccaggacctcct
ggtttagacatgcctggacctcaaggtgagaaaggagcaccgggttttccagggtcacct
ggctccaaaggccttccaggtcctccaggtttaacaggcagagatggacttccgggaagt
caagggtccaagggtgaaatgggagttatagggacacccggagtgccaggcttccctgga
tcgccaggtgtacgtggatctcctggtctgagaggtgatccgggttttactgggcccaga
ggtgatataggagagcctggaccgaaaggtgaaagaggagagcagggtcttcagggacca
ccaggaaatatgtctgtagtggacatggagcacatgaagggagataaaggagaccctgga
gacccaggaaatcctggtgctagtggaccgaaaggaatcagaggaatgcctggagaccct
ggtatgccagggaaagacggagagcctggtttacctggacattcaggtgaaaaaggagac
caaggaattcctggggagcctggcagcataggaacacctgggcaaaaaggaactgtagga
gaaatgggtataccaggtcctgttggtccgaagggcacaaagggtgacgtgggtacacca
ggtcatccagggtttagaggtcaagatggacaaaagggagatgaaggtgtacctggtgaa
cctggtattggcgtccctggacatccaggagaaaagggtccaccaggccagccaggattc
ccaggaattgctggagagaagggtcagaagggtcaaatgggaatgccaggccaaccgggt
ctacagggcacaaagggagagaagggcaccactggatttcctggtcagccagggatacct
ggagaaaagggtacttcagggttgcccggctctcagggagaaacaggactcgatggccga
ccaggtgagcctggtcttctgggcccccccggtccccctggtgagaaaggagacccagga
gtcgatgggatccctggatcctctggagagaggggagaaccaggtacacctggacaaggc
ttccccgggaaaccaggtgcagccggcatcaaaggtgataaaggaagccctggttttcct
ggcactcctgggcatccaggtgtccctggggtcaaaggtgataaaggctttcaaggccca
ctaggtcctcagggagaaccaggagagcggggactgccaggggtctctttggaaggccct
aagggagataagggagacagtggacaaccaggggacccaggaccccctggtgtccctggc
attactggagtcccaggaagagatggactaaaaggggataaaggagaccagggtcgccca
ggatttcaaggcgagacagggccgaagggtgactttgggactcctggccttcctggtcaa
ccaggtcttccaggtgttgatggacataaaggagaaagggggcaacagggcgccccaggt
tttagaggtgaaaagggtcctgtgggagaaattggctacaaaggagagcttggagacagt
ggattccctggggacaagggtaatcaaggcccccctggtcctcctggcccccacactttc
atcaaaggagacatggggccacctggaagccagggttttcctggaccaaaaggatccatt
ggaaatataggaccaaagggtctacaaggtatcactggcatcccagggccaaaaggtgaa
gatggcctcccgggttacaatggtcagcctggggccaaaggagagccaggccttcctgga
ccgcaaggaacaagaggatttccaggacctcctgggcctgatggtgtgccaggtcaagta
ggtccacctggaccctcttccatgtatcatgggtttttggttacccgacatagccagtct
gtggaggtcccagtgtgtcccgaaggaacgtcaccgatttatgacggctactccctgctt
tatgtgcagggcaacgagcgctctcatggacaagacctgggtacggcggggagctgtctc
agaaagttcagcccaatgccatttttgttttgtaacatcaacaatgtgtgtaattttgcc
tcccgaaatgactactcatactggctcacctcgcctgagccgatgcccatgagcatggct
ccgatcacagggcaaagcattaagcctttcatcagcaggtgcactgtgtgtgaagcccca
gccatggtcatagctgttcatagtcagaccattatgatcccaccctgtccaaatgggtgg
gattctctgtggattggttactcttttgtcatgcacacgagtgctggtgcagaggggtct
ggtcaggctctggcctctcctggttcttgtcttgaggagttccgcagtgctccattcatt
gagtgccatggccggggaacctgtaactactatgcaaactcctacagcttttggcttgcc
accatagaagacagcgagatgttcacgaaacctgttccaacaacgctaaaggctgggagt
ctacgtacacacatcagccgttgtcaggtgtgcctgaagaggacattggcctag
DBGET
integrated database retrieval system
