Bathycoccus prasinos: Bathy06g02660
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Entry
Bathy06g02660 CDS
T03089
Name
(RefSeq) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy06g02660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy06g02660
03016 Transfer RNA biogenesis [BR:
bpg03016
]
Bathy06g02660
Enzymes [BR:
bpg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Bathy06g02660
Messenger RNA biogenesis [BR:
bpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Bathy06g02660
Transfer RNA biogenesis [BR:
bpg03016
]
Prokaryotic type
tRNA degradation factors
Bathy06g02660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
Motif
Other DBs
NCBI-GeneID:
19015246
NCBI-ProteinID:
XP_007512844
UniProt:
K8EHH9
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All DBs
Position
6:complement(479176..480768)
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AA seq
530 aa
AA seq
DB search
MSCHPGTTSRVMVATSASTSSSQKCVFADRRRQKFSSIGERKRRIRCLSVRGGHCDVDDG
YVGGSAVRHPKSVTVKLGESSIKIETQKVGAQANGAVVCTEGETVLYSTVCAARELSADG
GWVPLTVNYTERFSAAGKFSGGFKKRDGTLKEGETLKSRIVDRPIRPLIPKGFGYETQIL
EWVLSYDNERTTDALAICAASAALAVSDVPMKTPVMGCRVGYIDGKFVANPTKSEMEQSR
LDLVMAGTKEAVLMIEGFGDFLTTEEMISGIACGQEEIARAAKEIEAWAKEVGKEKMGGD
MLIQTPEGIDEKVQALVAEDLKEAMLIPIKKVRGKAIGELRQKAVDALKKDENGENGFDS
AQVVQACGRIESAALREAIRTNGRRQDGRKLTHIRPIVAECGVLPRTHGSALFTRGETQC
YSVATLGGKSDGQRVDDALEDADDKRFMLHYFFPPSSVGECGRVGGANRREIGHGNLAER
ALLPIIPNDDDFPFTIKIESTVTESNGSSSMATVCGGCLALQDAGVPIKR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgagttgccatccgggaacgacgtctcgcgtgatggtagccacgagcgcctcgacgtcg
tcgtcccaaaagtgcgtcttcgcggacagacgacgacaaaagttctcgagcatcggggaa
aggaagaggaggattcgttgtttaagcgtcagaggaggacactgcgacgtggacgacggc
tacgtcggcggttcggcggttcgacatccaaaatctgtaaccgtgaaactgggcgaatca
tcaatcaaaatagaaacgcaaaaggtcggagcgcaagcgaacggcgcggtcgtgtgcacg
gaaggcgagacggttttatactccacggtgtgcgctgcgagagagttaagcgcggacggc
gggtgggtaccgttgacggtgaattacacggagcgattttcagccgccggaaaattttcc
ggcgggtttaagaaacgggacgggacgttgaaagaaggcgagactttgaaatcgagaatc
gtggaccgaccgattcggccgctgataccgaaagggttcggctacgagacgcagattttg
gagtgggtgttgagttacgataacgagaggacgacggacgcgttggcgatttgcgcggcg
agcgcggcgttggcggtgtcggacgtgccgatgaaaacgccggtgatgggatgtagagtc
gggtatatcgatggaaagtttgtcgcgaacccgacgaaaagtgagatggaacagtcgagg
ttggatttagtcatggcggggacgaaagaggcggtgttgatgattgaagggtttggtgat
tttttaacgacggaggagatgatttcgggcatcgcgtgcgggcaagaggaaatcgcgaga
gccgcgaaagagattgaagcgtgggccaaagaagttgggaaagagaagatgggtggagat
atgttgattcaaacgccagaggggatcgacgagaaagtccaggcgttagtcgcggaggat
ttgaaagaagcgatgttgattccaattaagaaagtgagaggaaaagcgatcggcgagttg
aggcaaaaagccgtggacgcgttgaagaaagacgagaacggagaaaatggttttgatagc
gcgcaagttgttcaggcgtgcggaagaatcgagtctgctgctttgcgcgaagccattaga
acgaatggaagacgtcaggatggtaggaaattgacgcacattcgtccgattgtcgccgag
tgcggggtgttgccgagaacgcacggaagcgcgttgtttaccagaggcgagacgcagtgt
tattccgtggcgacgttgggaggtaaatcggatgggcaacgcgtagacgacgcgttggag
gatgctgacgataagcgattcatgttgcattatttctttccgccgagttccgtgggcgaa
tgtgggcgagtcggcggcgcgaatcgacgagagattggacacggaaatttagccgaaaga
gcgctgttgccgattattccaaacgacgacgactttccgtttacgattaaaattgaaagc
acggtgactgaaagcaacggaagttcgagcatggcgacggtgtgtggtggttgtttggcg
ttgcaagacgccggcgtgccgattaaaaggtga
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