Brucella pseudintermedia: NIK97_01575
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Entry
NIK97_01575 CDS
T08522
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpsn
Brucella pseudintermedia
Pathway
bpsn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NIK97_01575 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsn03400
]
NIK97_01575 (ligD)
Enzymes [BR:
bpsn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NIK97_01575 (ligD)
DNA repair and recombination proteins [BR:
bpsn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NIK97_01575 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UWL60485
LinkDB
All DBs
Position
01:312204..314717
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AA seq
837 aa
AA seq
DB search
MGQPLETYRKKRDFTLTSEPRGKSARTKGDIFVVQKHDARRLHYDFRLEMDGVLKSWAVT
RGPSLVPGEKRLAVHVEDHPLEYAGFEGTIPKGEYGGGTVIVWDTGRWKSTGDAHKQYRK
GHLEFELTGEKLKGRWHLVRMHGKPGEKRENWLLIKGEDEFAREPDEPDILEEKPESVKT
GRVIADVEDEAPGWSSKTGPIKKKAATRRKVAASPPKNSRKRAMPDFIEPELATLVPAAP
EGDRWLHEIKFDGYRVQAHVAQGEVKLYSRGGLDWTEKFGQQIVADLLGTGADEAIFDGE
IVVENQSGLSDFSALQEDLSQGRSDRFTYYLFDLLHLDGNDLRGTPLVERKKLLEKLLSR
TSSTLRFSEAFDADGAAVWENACGLGLEGIVSKLKDAAYKSGRSNDWRKSKCIGRQEFVI
AGYVPSTATRGAIGSLLLGVQDKKGLVSVGRVGTGFSVKVAKELYKRLHAMRSEQSPFAV
PLTADERRGAKFVKPKLVAEIEFRAWTADKRVRHASFRGLREDKSASDVTWEEQNVPARV
SDKDTQKTDVKLTHPDRVYWPGEGVTKQGLADYYAEVWPRIEPFIVNRPLALLRCPTGIE
GEFFFQKHAWKGLNEHIVEVQDPKDKDEEPYISIRDFNGLIGLVQAATLEIHPWGSTLRN
WELPDTLTMDLDPGEGVPWPRVIEAATEVRERLEKLGLTAFVKTSGGKGLHVVAPLKPKA
GWDTLKSFTKAIADQMAADSPDRYVSTISKAKRKGKILIDYLRNQRGMTAVAPYSPRARS
GAGVSMPLAWEEVTPAIGPAHFTIPNTPTRLAALKNDPWQDFRSAETPLPKMKKQGG
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgggacagccactcgaaacctatcggaagaagcgcgatttcactctgaccagcgagcca
cggggcaagtccgcgcggacaaaaggtgacatctttgtcgtgcagaaacatgatgcgcgg
cggctgcattatgactttcgcctcgaaatggatggcgttctgaaaagctgggccgtgacg
cgcggcccaagcctcgttcccggcgaaaagcgcctggcggtgcatgtggaggatcatccc
cttgaatatgcgggctttgaaggcacaatacccaagggcgaatatggcggcggcacggtt
atcgtctgggatacgggacgttggaaatccaccggcgatgcacataaacaatacaggaaa
gggcacctagagtttgaactcaccggggaaaaactcaaaggacgctggcatcttgtccgt
atgcatggaaagcccggcgagaagcgggagaactggcttctcatcaagggagaggacgag
ttcgccagggagcccgatgagccagacattctcgaagaaaaacctgaatcggtaaaaacc
ggacgcgtgatcgccgatgttgaagacgaggcccccggctggtcgtcgaaaaccggcccg
atcaagaagaaggcggccacccggaggaaagttgcggcctcacccccaaaaaacagtcgg
aaacgagctatgccggactttatcgagcccgagctggccacgctcgtaccggctgcgccg
gaaggagatcgctggcttcatgagataaagtttgacggttatcgtgttcaggcccatgtg
gcgcagggcgaggtaaagctctattcgcgcggcggactggattggaccgaaaaattcggt
cagcagatcgttgccgaccttttggggacaggtgcggacgaagccattttcgacggcgaa
atagttgtcgaaaatcagtcggggctatccgatttttcggccttgcaggaagatctgagc
cagggtcggtcggaccgtttcacttactatctcttcgatcttctccatttggacgggaac
gacctacggggcacgcccttggttgagcgcaaaaagctgctcgaaaaactgctttccaga
acgtcgtccactctgcgcttcagcgaggcattcgatgccgatggcgctgcggtatgggag
aatgcgtgcggacttggtcttgaagggattgtgtcgaagctgaaggatgcggcgtacaaa
agcgggcgcagcaacgattggcgcaagtccaaatgcattggacggcaggaatttgttatt
gcgggttatgttccctcaacagcgacaagaggtgcaataggctcgctgctattgggagta
caggataaaaaggggctggtttcggtgggccgtgtgggaaccggcttttcggtcaaggtt
gccaaggaactttacaaacggctgcacgccatgcggtcggaacaaagccccttcgcggtg
ccattgaccgcagatgaaaggcgcggcgcgaagttcgtcaagccgaaactggtggcggag
atcgaatttcgcgcatggaccgccgacaagcgggtgcgtcacgcttcctttcgggggctg
cgcgaggacaagtctgccagcgatgtcacatgggaggagcaaaacgtgccagctcgtgtt
tccgacaaggatacccagaagaccgatgtcaagctcacgcatcctgaccgtgtctactgg
cccggcgagggcgtcaccaagcaagggctcgccgattattacgccgaggtgtggccgcgc
atcgagcctttcatcgtcaatcgccccttggccctgttgcgctgtcctaccggtatagag
ggagagtttttctttcagaaacatgcatggaaggggctgaatgagcatattgtcgaagtt
caggacccgaaggacaaggacgaggagccttatatcagcatccgcgatttcaacgggctg
atcggtctggtgcaagccgcgacactggaaattcatccttggggatcgacgctcaggaac
tgggaattgcctgatacactgacgatggatcttgacccgggcgaaggtgttccctggccg
cgcgtgattgaggccgccaccgaagtcagggagcgactggaaaaactcggtttgacggcc
tttgtcaaaacttctggcggcaaggggctgcatgtggtggccccgctcaagccaaaggct
ggctgggacacgctgaagagctttaccaaggctatcgccgaccagatggctgccgacagc
ccggatcgctatgtatcgacgatttccaaagccaagcgcaaaggcaagattcttatcgat
tatctgcgcaaccagcgcggcatgactgccgtagcgccttattctccgcgggcgcggtcc
ggcgccggggtatccatgccgcttgcctgggaggaagtcaccccggccataggtccggcg
cattttaccattcccaacacgccgacgcggctggctgcgttgaaaaacgacccctggcag
gattttcgcagtgcggaaacgccgttgccgaaaatgaaaaaacagggtgggtga
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