Bordetella petrii: Bpet4964
Help
Entry
Bpet4964 CDS
T00637
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpt
Bordetella petrii
Pathway
bpt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bpet4964 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpt03021
]
Bpet4964 (rpoC)
03400 DNA repair and recombination proteins [BR:
bpt03400
]
Bpet4964 (rpoC)
Enzymes [BR:
bpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bpet4964 (rpoC)
Transcription machinery [BR:
bpt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bpet4964 (rpoC)
DNA repair and recombination proteins [BR:
bpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bpet4964 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
CAP45316
UniProt:
A9IJ22
LinkDB
All DBs
Position
complement(5224575..5228813)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKAEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGIFFTDVAEVQRAYDNG
EVELQSRITVRLTEYERDDNGEFQPVLRRHETTVGRALLSEILPKGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMGDMLIPKAKEGILAEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKASDKVGKAMMEQLATEPVVNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTTQGYAMKALVEGGEVIEPLRDRIL
GRVAAIDVVDPDTQETAIAAGTLLDEDLVDLIDRIGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGSHVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSTGKVGF
ASTMRYVTNAKGERVAISRSGELAIFDDNGRERERHKIPYGATVLVGDGEAVKAGTRLAT
WDPLTRPIVSEYGGAVRFENIEEGVTVAKQLDEITGLSTLVVITPKTRSGKTVTRPQIKL
VNENGEDVKIAGTDHSVNISFPVGALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTEFIPGEQVERSELLNENDRVTAEGKRPATYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHMARKDKEALEAAERE
AARQLANPFEDAPVTVDADAPQSDAGQEGSAE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgacctcttcaagcaagtctcgcaagacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaaaattcgttcgtggtcttacggcgaagtccgcaag
cccgaaaccatcaactatcgtacgttcaagcccgaacgcgatggcctgttctgctcgaag
atctttggcccgatcaaagactacgaatgcctttgcggaaaatacaagcgcctgaagcat
cgtggcgtgatctgcgagaagtgcggcgtcgaagtcacggtggccaaggtgcgccgcgag
cgcatgggccacatcgagctggccagcccggttgcgcacatctggttcctgaagagcctg
ccgtcgcgcctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtat
ttcgaagcctggtgcgtcatcgagcccggcatgacgccgctcaagcgcggccagatcatg
tccgacgacgacttcctggccaagaccgaagagtacggtgacgacttccgcgccctgatg
ggtgccgaagccgtgcgcgaactgctgcgcaccatcgacatcgaccgcgaagtggaaacg
ctgcgcggcgagctcaaggccaccagctccgaagccaagatcaagaaaatctccaagcgc
ctgaaggtgctggaaggcttccagaagtcgggcatcaaggccgaatggatggtcatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctcgatggcggccgcttt
gccacgtccgaccttaacgacctgtaccgccgcgtcatcaaccgcaacaaccggttgaag
cgcctgctcgaactcaaggcgccggaaatcattctgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggccatgacgggcgccaac
aagcgccagctgaagtcgctggccgacatgatcaaaggtaagagcggccgcttccgccag
aacctgctgggcaagcgcgtcgactactccggccgttcggtcatcgtggtgggcccgcaa
ctcaagctgcaccagtgcggcctgcccaagctgatggcgctggaactgttcaagcccttc
atcttcaaccgtcttgaaatgatgggcctggccaccaccatcaaggccgccaagaagctg
gtcgaaagccaggaaccggtggtgtgggacattctggaagaagtcatccgcgaacacccg
gtcatgctgaaccgggcgcccacgctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccaactgcacccgctggtctgcgcggcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgctggaagcgcagctggaagcg
cgcaccctgatgctggcctcgaacaacgtgctgttcccggccaacggcgaaccgtccatc
gtgccgtcgcaggacatcgtgctcggcctgtactacacgacgcgcgaacgcatcaacggc
aagggcgaaggcattttcttcaccgacgtggccgaagtgcagcgtgcctatgacaacggc
gaagtcgagctgcagtcgcgcatcacggtgcgtctgaccgagtacgagcgcgacgacaac
ggcgaattccagccggtgctgcgccgtcacgaaaccacggtcggccgcgcgctgctgtcg
gaaatcctgcccaagggcctgcccttcacggtgctgaacaaggcgctgaagaagaaggaa
atctcgcgcctgattaaccagtcgttccgccgttgcggcttgcgcgacacggtgatcttc
gccgacaagctgatgcagtcgggcttccgcctggccacccgcggtggcatctcgatcgcc
atgggcgacatgctgattcccaaggccaaggaaggcatcctggccgaggccagccgcgaa
gtgaaggaaatcgacaagcagtactcgtcgggtctggtcacctcgcaagagcgctacaac
aatgtggtcgacatctggggcaaggccagcgacaaggtcggcaaagccatgatggagcaa
ctggccacggaacccgtggtcaaccgccatggcgaagaagtgcgccaggaatcgttcaac
tcgatctacatgatggccgactccggcgcccgcggttccgcggcccagatccgccagctg
gccggcatgcgcggcctgatggccaagcctgacggctccatcatcgagacgcccattacc
gcgaacttccgcgaaggcctgaacgttctgcagtacttcatttcgacccacggcgcgcgc
aagggcttggccgacaccgcgctgaagacggcgaactcgggttacctgacccgccgtctg
gtcgacgtgacgcaagacctggtcattaccgaagacgattgcggcaccacccagggctac
gccatgaaggcgctggtcgaaggcggtgaagtcatcgagccgctgcgcgaccgcattctg
ggccgtgtggctgccatcgacgtggtcgatcccgacacgcaggaaacggccattgccgcc
ggcacgctgctcgacgaagacctggtcgacctgatcgaccgcatcggcgtcgacgaagtg
aaggtgcgcacgccccttacttgcgaaacccgtcatggcctgtgcgcgcactgctatggc
cgcgacctcggccgcggctcgcacgtcaacgtcggcgaagctgtcggcgtcattgccgcc
cagtccatcggcgaacccggcacgcagctcaccatgcgtacgttccacatcggtggcgcg
gcatcgcgttcggccctggccagcgcggtcgaaaccaagtcgaccggtaaggtgggcttt
gccagcacgatgcggtatgtcaccaacgccaagggcgaacgcgtggcgatctcgcgttcg
ggcgaactggcgatcttcgacgacaacggtcgtgagcgcgaacgtcacaagatcccgtac
ggcgctactgtgctggtcggcgacggcgaagccgtcaaggccggcacccgcctggcaacg
tgggatccgctgactcgtccgatcgtgtccgagtacggcggcgcggtgcgcttcgagaac
atcgaagaaggcgtcaccgtcgccaagcagctcgacgagatcaccggtctgtcgaccctg
gtcgtgatcacccccaagacccgcagcggcaagaccgttacgcgtccgcagatcaaactg
gtcaacgagaacggcgaagacgtcaagatcgccggcaccgatcactcggtgaatatctcg
ttcccggtgggcgcgctgatcaccgtgcgcgatggtcagcaagtggcggtgggtgaagtg
ctggcgcgtattccgcaagaatcgcaaaagacccgcgacattaccggcggtctgccgcgc
gtggccgagctgttcgaagcgcgctcgccgaaggacgccggcatgctggccgacgttacc
ggcaccgtgtcgttcggcaaggacaccaagggcaaacagcgcctggtcattaccgacctg
gaaggcgtcagccacgagttcctgattcccaaggaaaagcaggtgctggtgcacgacggc
caggtggtgaacaagggcgaaatgatcgtcgacggcccggccgacccgcacgatatcctg
cgcctgcagggcatcgagaagctggcgacctacatcgtcgacgaagtccaggacgtctat
cgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgattgttcgccagatgctg
cgccgtgtgaacatcgttgacgcgggcgataccgagttcatcccgggcgagcaggtcgag
cgttccgagctgttgaacgaaaacgaccgtgtcactgccgaaggcaagcgtcccgctacg
tacgacaacgtgctgttgggtatcacgaaggcttcgctgtcgaccgattcgttcatctcg
gctgcctcgttccaggaaaccacgcgtgtcctgaccgaagccgctatcatgggcaagcgc
gacgacctgcgtgggctgaaggaaaacgtcatcgtcggccgcctgattccggcgggtacc
ggcctggcctatcacatggcgcgcaaggacaaagaagccctcgaggccgccgagcgcgaa
gcggcacggcaattggcgaacccgttcgaggatgcgccggttaccgtggacgccgatgcg
ccccagtccgacgccggccaggagggttccgccgaataa
DBGET
integrated database retrieval system
