Paraburkholderia phytofirmans PsJN: Bphyt_3073
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Entry
Bphyt_3073 CDS
T00765
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bphyt_3073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_3073
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bphyt_3073
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bphyt_3073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_16
nSTAND1
DnaJ_CXXCXGXG
AAA_21
AAA_29
DUF4350
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
ACD17465
UniProt:
B2T6A1
LinkDB
All DBs
Position
1:3464908..3467760
Genome browser
AA seq
950 aa
AA seq
DB search
MIGGHFWLDGYTRLDLAAMHLLAFTGIIFNSSLGMLRATSHAVGRPIGHAYSLVIDMDAI
RNNAPSTPPSDAPAFTGFVRVRGAREHNLKNIDVQIPRDALVVFTGVSGSGKSSLAFGTL
YAEAQRRYFESVAPYARRLIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLS
SLVRMLYSRTGDYPPKQPMLFAEDFSPNTVQGACPTCHGLGRVYEVTEKSMVPDDSLTIR
ERAIAAWPPAWHGQNLRDILVTLGYDVDKPWRDLPKKDRDWILFTDEQPTVPVYAGLTPK
ETRAALRRKDEPSYQGTFTGARRYVLHTFANTQSALMKKRVSRFMIGSVCPTCHGKRLKK
EALSVKFAGLDIGEFAQLPLARLAEMLAPIARGEWPEPDVGHSGKDPGKGSVLSKNAMRD
AVDKRVAAGGSAHKAAPDVRRTPNLSEEKRVAAQRIAAELLERLTTLVDLGLGYLALERS
TPTLSSGELQRLRLATQLSSQLFGVVYVLDEPSAGLHPADGEALFSALQSLKAAGNSLFV
VEHDLQMMRRADWLVDVGPAAGEAGGHVVYSGPPAGLAKVEASHTRRHLFAPPAPVARAT
REPAGWLRLAGITRNNLHGLDAAFPLGCLTAVTGVSGSGKSSLVSQALPELVASHLGRVF
ENPDDDEQDPLLATASAPTSGRIAEGMDALRRLVRVDQKPIGRTPRSNLATYTGLFDHVR
KLFADTPLARKRRYGAGRFSFNVAQGRCPTCEGEGFVSVELLFLPSVYAPCSTCHGTRYN
TQTLEVTWRDKNIAEVLGLTVDAACDFFADEASVMRALKVLRDIGLGYLRLGQPATELSG
GEAQRIKLATELQRAQRGDTLYILDEPTTGLHPADVDRLMVQLQGLVDAGNTVVVVEHDM
RVASQSDWVVDVGPGAGDAGGKIVASGTPAEILRVKESRTAEYLRQHLAA
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgataggcggtcatttctggcttgacgggtacacgcgtctcgatctcgccgcgatgcat
ctcctcgcgttcactggcatcatcttcaattcatcgttgggcatgctccgtgcaacttca
catgcggttggccgtcccatcggccacgcttattcgctggtcatcgatatggacgccatc
cgcaacaacgctccttcaacgccgccgtccgacgcacccgccttcaccggcttcgtgcgc
gtgcgcggcgctcgcgaacacaatctgaaaaacatcgacgtgcagattccgcgagatgcg
ctggtcgtcttcaccggagtgtccggctcgggcaaatcgtcgctggcattcggcacgttg
tacgccgaagcgcagcggcgctatttcgaatcggtcgcgccatatgcccgacgcctgatc
gagcaggtcggcgtacccgaagtggacgccatcgaaggcctgccgcccgcggtcgcgttg
caacagcagcgcggcacgccgagcgcgcgctcgtcggtcggcagcgtgaccacgctgtcg
agtctcgtacgcatgctctattcgcgcaccggcgactatccgccgaagcaacccatgctg
ttcgccgaggatttctcgccgaacacggtgcaaggcgcctgcccgacttgtcacggactc
ggtcgcgtgtacgaggtcacggaaaaatccatggtgccggacgactcgctgaccattcgc
gagcgcgcaatcgccgcgtggccgcccgcgtggcacggacagaatctgcgcgacattctg
gtgacgctgggctacgacgtcgataaaccgtggcgcgatttgccgaagaaagaccgcgac
tggattctgttcaccgacgaacagccgaccgtgccggtctatgccggcctcacgccgaaa
gaaacccgcgccgcgctcaggcgcaaggacgaaccgagctatcagggcaccttcaccggt
gcgcgccgctacgtgctgcacacgtttgcgaacacgcaaagcgcgttgatgaaaaaacgc
gtgtcgcgattcatgatcggcagcgtctgtccgacctgtcatggtaagcggctcaagaag
gaagcgctgtcggtgaagttcgccgggctcgatatcggcgagtttgcccagttgccgcta
gcgcggctcgccgagatgctcgcaccgatcgcgcgtggcgaatggcccgagccggatgtc
ggacattcgggcaaagaccctggcaaaggcagcgtgctcagcaagaacgccatgcgcgat
gccgtcgataaacgggtcgccgcgggcggttccgcgcacaaagccgcgcccgatgttcgg
cgcacacctaacctgtccgaggaaaaacgcgtcgccgcgcagcgcattgccgccgaattg
ctcgaacgcctgaccactctggtcgatctgggtctgggctatcttgcgctggagcgcagc
acgcccacgctgtcatccggcgaattgcagcgcttgcgactcgctacgcaattgtcctcg
cagttgttcggcgtcgtgtatgtactcgacgagccatcggccggcctgcatcccgcggat
ggcgaagcgctcttcagcgcgttgcagagtctgaaggccgcgggcaattcgttgttcgtc
gtcgaacacgatttgcagatgatgcggcgcgccgactggctcgtcgacgtcggtcccgca
gccggcgaagccggtggccatgtggtttatagcgggccgcccgccggcctcgcgaaggtc
gaagcgtcgcacacgcgccggcatctgttcgcgccgcccgcgcccgtcgcgcgcgcgacg
cgcgaaccggccggctggctgcggctcgccggcatcacgcgcaacaatctgcacgggctg
gacgccgcgtttccgctcggttgcctgaccgccgtcaccggcgtgtcgggctcgggcaaa
tcgagtctcgtgagccaggcgctgccggaactggtcgccagccaccttggacgcgtcttc
gaaaaccccgacgacgacgaacaagacccgttgctcgccaccgcgagtgcgccgaccagc
ggccgcatcgctgaaggcatggacgcgctgcggcggctcgtgcgcgtcgatcagaaaccg
atcgggcgcacgccgcgttccaacctggcgacgtacacgggcctcttcgaccacgtgcgc
aagctgttcgccgacacgccgctcgcccgcaaacgccgctacggcgcgggccgtttctcg
ttcaacgtggcgcaaggccgttgcccgacgtgcgaaggtgaaggcttcgtcagcgtcgag
ctactgttcctgccgagcgtctatgcgccctgctcgacctgtcacggcacgcgctacaac
acgcagacgttggaagtcacatggcgcgataaaaacatcgccgaggtgctcggcctgaca
gtcgacgccgcctgcgatttcttcgccgacgaagccagcgtgatgcgcgcgctgaaagtg
ctgcgcgacatcggcctcggctatctgcggctcggtcagccggccacggaattgtccggc
ggcgaagctcagcgcatcaagctcgccacggaactgcaacgcgcacaacgcggcgacacg
ctatatatcctcgacgaaccgaccaccggcctgcatcccgccgacgtcgaccggctgatg
gtgcaactccaaggactcgtggatgccggcaataccgtcgtcgtggtggaacacgacatg
cgggtggcgtcgcaaagcgactgggtcgtcgacgtcggtccgggcgccggcgatgccggc
ggcaagatcgtggcgagcggcacgccggctgagattctgcgcgtgaaggaaagccgcacc
gccgagtatttgcggcagcacctcgcagcgtga
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