Bradyrhizobium quebecense: J4P68_0016720
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Entry
J4P68_0016720 CDS
T07890
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bqb
Bradyrhizobium quebecense
Brite
KEGG Orthology (KO) [BR:
bqb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bqb03019
]
J4P68_0016720 (hrpB)
Enzymes [BR:
bqb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J4P68_0016720 (hrpB)
Messenger RNA biogenesis [BR:
bqb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J4P68_0016720 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
HA2_C
ResIII
Flavi_DEAD
AAA_30
AAA_19
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UGY06272
LinkDB
All DBs
Position
complement(3483154..3485622)
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AA seq
822 aa
AA seq
DB search
MPHHFDSPLPIDAVLDELDRTLDRHNAAVLVAPPGAGKTTRVPLALLDAPWAKGKKIIVL
EPRRIAARASAERMAKTLGERPGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPEL
NGVAAVLFDEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVARLLGDAPVV
ASEGRAFPVETRYVGRKVDAPLERQMAETIAAALRADAGSVLAFLPGAAEIRRTQTFLAE
RVHDASVEIVPLFGALDPAVQDRAIAPAPKGIRKVVLATSIAETSLTIEGVRIVVDCGLA
RVPRYEPDIALTRLETVRASRAAVDQRRGRAGRTEPGVCYRLWDEPQTASLPAYTAPEIL
SADLSSLVLDLAQWGISDPASLAFLDPPPGPALKEARSLLGELGALDDDGRITEEGKSLR
ALALPPRLARMIVDSARFGAGEEAAEIAAVLSERGLGGDSVDLDHRLDQFRRDRSQRASS
ARSMAARWASQVKAAVSEQKDLSTGVMLAFAFPDRVAKNRGNGSFVLANGRGAAVEQTAA
LARLPTITVAELTGTAASGRILLAAPITQEEIEQRFADQIENVEEVAFDRGAMALRARRR
RSLHAITLSEAPMPLKPSAETARVFADGLIAVGLDRLPWSKHSKQWRDRIMFLRKAEDDS
WPDLSDTALAARADDWLVPALYDKTALKDLSAGDLSDALTALLPWDLRARLDREAPTHFE
APTGTQLAIDYEAEQGPTIAVRLQELFGLNTHPSIAKGAVPLVLELLSPAQRPVQVTRDL
PGFWRGSYAAVRSDLRGRYPRHPWPEDPASAMPTRRVKPRGT
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
ttgccgcaccatttcgatagcccgctgccgatcgacgccgtgctcgatgaactcgaccgc
acgctcgatcgccacaatgccgccgtgctggtcgcgccgccgggcgccggcaagaccacg
cgcgtgccgctggcgttgctcgatgcgccgtgggccaaggggaagaagatcatcgtgctg
gagccgcgccgcatcgccgcgcgcgccagcgccgagcggatggcgaagacgctcggcgag
cggcccggagagaccgtcggctatcgggtgcgcttcggctcaaaggtgtcgcgcgcgacg
cggatcgaggtcgtgactgagggcatcttctcgcgccagatcctcgacgatcccgagctc
aacggcgtcgccgcggtgctgttcgacgaattccacgagcgctcgctcgacgccgatctc
gggctggcgctggcgcgcgacgcgcaaaccggcctgcgcgaggatctgcgcatcctcgtg
atgtcggcaacgctcgatggcgcgcgcgtcgcaaggctgctcggcgacgcgcctgttgtc
gcgagcgagggccgcgccttcccggtcgagacccgttacgtcggccgcaaggtcgacgcg
ccgctggagcggcagatggccgagacgatcgcggccgcgctgcgcgccgatgccggctcg
gtgctggccttcctgccgggtgcggccgagatccgccgcacccagaccttcctcgccgag
cgcgtgcacgacgcctcggtcgagatcgtgccgctgttcggcgcgctcgatcccgccgtg
caggatcgcgccatcgcgccggcgccgaaggggatccgcaaggtcgtgctggcgacctcg
atcgccgagacctcgctgaccatcgagggcgtgcgcatcgtggtggattgcggcctggcg
cgggtgccgcgctacgagccggacattgccttgacccggctcgagaccgtgcgggcctcg
cgcgccgcggtcgatcagcggcgcggccgcgccggccgtaccgagcccggcgtctgctac
cggctctgggacgagccgcagaccgcatcgctcccggcctacaccgcgcccgagatcctc
tccgccgatctgtcctcgctggtgctcgacctagcgcaatggggcatcagcgatcccgca
agccttgccttcctcgatccgccgcccgggcccgcgctgaaggaagcgagatcgctgctc
ggtgagctcggtgcgctcgacgatgacggccgcatcaccgaggagggcaagagcctgcgc
gcgctggcgctgccgccgcggctggcgcgcatgatcgtggactccgcgcgcttcggtgcg
ggcgaggaggcggccgagattgccgccgtgctgagcgagcgcgggctcggcggcgacagc
gtcgatctcgatcacaggctcgaccagttccgccgcgaccgctcgcagcgcgcatcgagc
gcgcggagcatggccgcgcgctgggcctcgcaggtgaaggcggcggtgagcgagcagaag
gatctctcgaccggcgtcatgctggccttcgcgtttccggatcgcgttgccaagaaccgc
ggcaatggcagcttcgtgctggccaatggccgcggcgctgccgtggagcagaccgcggcg
ctggcgcggctgcccactatcacggttgccgaactgaccgggacggcggcgagcggccgc
atcctgctggcggcgccgatcacccaggaggagatcgagcagcgcttcgccgaccagatc
gaaaacgtcgaagaggtggcgttcgaccgcggcgcgatggcgctgcgcgcgcgccgccgg
cgttcgctgcacgcgatcacgctgtcggaagcgccgatgccgctcaagccgtcggccgag
accgcgcgcgtgttcgccgacggcttgatcgcggtgggtctcgaccggctgccgtggtcg
aagcattcgaaacagtggcgcgaccgaatcatgttcctgcgcaaggccgaggacgacagc
tggcccgatctgtcggacactgcactcgcagcgcgggccgacgactggctggtgcccgcg
ctctacgacaagaccgcgctgaaggatctgtccgccggcgacctgtcggacgcgttgacg
gcgctgttgccgtgggacctgcgcgcgcggctcgatcgcgaggcaccgacgcatttcgag
gcgccgaccggaacgcagcttgcgatcgattacgaggctgagcagggcccgaccatcgcg
gtgcggctgcaggagctgtttgggctcaacacccatccctcgatcgccaagggcgcggtg
ccgctggtgctggaactgctgtcgcccgcacagcggccggtgcaggtgacgcgcgatctg
ccgggtttttggcgcggcagttacgctgcggtgcgttctgacctgcgcggccgctatccg
cgccatccctggccggaagatcccgccagcgcgatgccgacgagacgcgtgaaaccgcgc
ggcacctga
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