Bradyrhizobium sp. ORS 278: BRADO4508
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Entry
BRADO4508 CDS
T00516
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bra
Bradyrhizobium sp. ORS 278
Brite
KEGG Orthology (KO) [BR:
bra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bra03032
]
BRADO4508 (topA)
03400 DNA repair and recombination proteins [BR:
bra03400
]
BRADO4508 (topA)
Enzymes [BR:
bra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BRADO4508 (topA)
DNA replication proteins [BR:
bra03032
]
Prokaryotic type
DNA Topoisomerases
BRADO4508 (topA)
DNA repair and recombination proteins [BR:
bra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BRADO4508 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
zf-C4_Topoisom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CAL78246
RhizoBase:
BRADO4508
UniProt:
A4YWH0
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All DBs
Position
4707320..4710067
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AA seq
915 aa
AA seq
DB search
MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPEENFRMIWEVDPKAAG
RLNDIAKSLKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQKIERVVFNAITKQAV
SEAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ELEIEKFVPREYWSLIATLATPRGDTFEARLVGADGKKIQRLDIGTGAEAEDFKNALNAA
TYSVATVDAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL
ITYMRTDGVQIAPEAITQARKVIGEIYGNKYVPDSPRQYQTKAKNAQEAHEAIRPTDLSR
KPAELRKRLDDDQAKLYELIWTRTIASQMESAELERTTVDIVAKAGGRTLELRATGQVIK
FDGFLALYQEGRDDEEDEDSRRLPQMSQGEALKRQNLAVTQHFTEPPPRFSEASLVKRME
ELGIGRPSTYASILDVLKARGYVKLEKKRLHGEDKGRVVIAFLENFFRRYVEYDFTADLE
EQLDRISNNEIAWQQVLKDFWTGFIGAVDDIKDLRVAQVLDALDEMLGPHIYPPREDGGD
VRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAADSEAAADRMLGQDPDSGLEVA
VKAGRFGPYIQLGEQKDYAEGEKPKRAGIPKGTQPSDVDLDLALKLLSLPREIGKHPETG
LPITAGLGRFGPFVKHDKTYASLEAGDEVFDIGLNRAVTLIAEKVAKGPSKRFGADPGKA
LGDHPSLGPVAVKAGRYGAYVTAGGVNATIPGDKEKDTITLAEAIALIDERAAKGGGKAK
APKKAAKPKAAAKPKAGGDDDTPKPAKKAVAKKAAAKPKSDSTSKARAPVAKAAKTSAKP
ATKATPKKSAGKARG
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgtcattgtggagtcgcctgccaaggccaagacgatcaataagtatctgggc
tcctcctacgaggttctggcctcgttcggccacgtccgcgacctccccgcgaagaacggt
tccgtcgatccagaagaaaatttccggatgatctgggaggtcgaccccaaggcggccggc
cgactcaacgacatcgccaaatccctgaagggtgcggaccgcctgattctcgccaccgac
cctgatcgcgagggcgaggcgatctcctggcatgttctggaggtcatgaaggagaagcgc
gcgctgaaggatcagaagatcgagcgcgtcgtgttcaacgccatcaccaagcaggccgta
tcggaggcgatgaaaaacccgcgccagatcgacggcgcgctggtcgacgcctatatggcg
cgccgcgccctcgattacctcgtcggcttcacgctgtcccccgtgctgtggcgcaagctg
ccgggcgcccgctcggccggccgcgtgcagtcggtggcgctgcgcctggtctgcgatcgc
gaactggagatcgagaagttcgtcccgcgcgaatactggtcgctgatcgcgaccctcgcg
acgccgcgcggcgacacgttcgaagcgcgcctcgtcggtgccgacggcaagaagatccag
cggctcgacatcggcaccggcgcggaagccgaggacttcaagaacgcgctgaacgcggcg
acctattcggtcgcgaccgtcgacgcaaagccggcgcggcgcaacccgcaggcacccttc
accacctcgaccctgcagcaggaggccagccgcaagctcggctttgcgccggcgcacacg
atgcggatcgcgcagcggctctatgagggcatcgacatcggcggcgagaccaccgggctc
attacctatatgcgaaccgacggcgtgcagatcgcccccgaggcgatcacccaggcgcgc
aaggtgatcggcgagatctacggcaacaaatatgtgccggacagcccgcgccagtaccag
accaaggccaagaacgcccaggaggcccatgaggcgatccgcccgaccgacctgtcgcgc
aagccggccgagctgcgcaagcggctcgatgacgaccaggccaagctctacgagctgatc
tggacccgcaccatcgcgagccagatggaatcggccgagctggagcgcacgaccgtcgac
atcgtcgccaaggcaggcggccgcaccctggagctgcgcgcgaccggacaagtgatcaag
ttcgacggcttcctcgccctctatcaggaaggccgcgacgacgaggaggacgaggacagc
cgccgcctgccgcagatgagccagggcgaggcgctgaagcgccagaacctcgcggtcacc
cagcacttcaccgagccgccgccgcgcttctccgaggcgtcgctggtcaagcgcatggag
gagctcggcatcggccggccctcgacctatgcctcgatcctcgatgtgctgaaggcgcgc
ggctatgtgaagctcgagaagaagcggctgcatggcgaggacaagggccgcgtcgtcatc
gctttcctggagaacttcttccgccgctatgtcgagtatgatttcacggcggacctggag
gaacagctcgaccgcatctccaacaacgagatcgcatggcagcaggtcctgaaggacttc
tggaccggcttcatcggcgccgtcgacgacatcaaggatctgcgcgtggcgcaggtgctc
gacgcgctcgacgagatgctcggcccgcacatctacccgccgcgcgaggatggcggcgac
gtccggcaatgcccgacctgcggcaccggccggctcaatctgaaggccggcaagttcggc
gccttcgtcggctgctccaactatccggagtgccgctacacccggccgctcgccgccgac
agcgaggccgcggccgatcgcatgctcggccaggatccggactcgggcctcgaggtcgcc
gtcaaggccggccggttcgggccatacatccagctcggtgagcagaaggactatgccgag
ggcgagaagccgaagcgggccggcatccccaagggcacgcagccctcggacgtcgatctc
gatctggcgctgaagctgctgtcactgccgcgcgagatcggcaagcatccggaaacgggt
ttgccgatcaccgctgggcttggccgcttcggacccttcgtcaagcacgacaagacctat
gcgagcctggaggccggcgacgaggtattcgacatcggcctcaaccgtgcggtcaccttg
atcgccgagaaggtcgccaagggtccgagcaagcggttcggcgccgatcccggcaaggcg
ctgggtgatcatccctcgctcggtccggtcgccgtgaaggctggccgctacggcgcctat
gtcaccgccggtggcgtcaacgccaccatccccggcgacaaggagaaggacacgatcacg
ctcgccgaggcgatcgccctgatcgacgagcgcgccgccaagggcggcggcaaggccaag
gctccgaagaaggctgcgaagccgaaggccgcggccaaaccaaaggccggcggcgacgac
gacacgccgaagccggcgaagaaggccgtcgccaagaaggccgcggccaagccgaaatca
gactccaccagcaaggcgcgtgcgccggttgcgaaggccgccaagacatcggccaagccc
gccaccaaggccacgcccaagaagagcgccggcaaggcccgcggatga
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