Bdellovibrio reynosensis: MNR06_10285
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Entry
MNR06_10285 CDS
T08711
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brey
Bdellovibrio reynosensis
Pathway
brey03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MNR06_10285 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brey03400
]
MNR06_10285 (ligD)
Enzymes [BR:
brey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MNR06_10285 (ligD)
DNA repair and recombination proteins [BR:
brey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MNR06_10285 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
DUF4951
Motif
Other DBs
NCBI-ProteinID:
UOF00089
LinkDB
All DBs
Position
complement(2191432..2193924)
Genome browser
AA seq
830 aa
AA seq
DB search
MPLREYNKKRNFRETPEPKHAPKKSKSKDHPLMFVVQEHHASRLHYDFRLEYNGVLKSWA
VPKGPSNDPTVKRLAVETEDHPLSYGNFEGVIPEGNYGAGRVYIWDTGTWEPIGNPREGL
KKGHLEFKLKGKHLHGQWMLIKTSRPASGDKSQWLLVKRTDAYANTEPLVPIEDPNTGKV
SKRRKTAEPAAAAKKVTSKKKARVKKLPGFISPQLAELVKEPPEGESWVHETKFDGYRTQ
AHIEGGKVTLYTRNGLNWSQKYPTIASELKDLPVSNAILDGEVVWLDDQGRSDFQKLQNS
LKAKESRRLIYYVFDLLYVDGVDCRSFPLKERKHRLEKILAEFDNRIIRYSEHVDGSGAD
LFEAACNYQLEGLVSKDLDAPYRSSRNSGWVKTKCKLHQEFVIGGYTVGEGSRNGGFGAL
LLGAYEDGKLRYVGKVGTGFTERSLMDIHKKLKPREMTKSPFDIASPKGRGVHYIKPGLV
AEVSFGQWTSDKILRTAVFHGLREDKPAKEIHIENKKSLKSVIVPKKKVSPKQKADNEKL
ALTNPDKILYRKEKITKLQIARYYQDFAEVILPHIANRPLALLRCPEGSEKTCFFQKHIA
GKVPLEFIPVTIVERSGPKAYLTIDSKEGLLSLSQMNAFELHAWNCHSDAIENPDQIVMD
FDPGPGVHWKQVIEAAFSLKEILDGLQLKSFVKVSGGKGVHVHIPVAPIYSWDQIKTFSH
TLGKEMASRNPDRYTVNMAKKVRGKRIFVDYLRNGRGATAVVPYSLRARAKSAVAMPITW
EELKTIEGPDVFTLENAIKHLSKRKVDPWKDFFKKEQRINILKPVVSSAA
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgccgttgcgcgagtataataaaaaaagaaattttagggaaacgccagaaccaaaacat
gctcctaagaaatcaaaatccaaggatcatcctttgatgtttgtggtgcaagaacatcat
gcctctaggttgcattatgattttcgccttgaatacaacggtgttttaaaaagctgggct
gtgcccaaaggtccttccaatgacccgacagtaaaacgtttggccgttgaaacagaagat
caccccttatcctatggaaattttgaaggcgtgattcctgaaggcaactacggtgcgggc
cgagtttacatttgggacactggcacttgggagccgatagggaatccccgtgagggttta
aagaaagggcatttggaatttaaacttaaaggtaagcatctgcatggtcagtggatgctt
atcaaaacaagtcgcccagcttccggcgacaagtcgcagtggttgcttgttaaaaggacc
gatgcttatgccaacacagaaccgttagtccccattgaagatcctaatactggaaaagta
agtaagcgccgaaaaaccgctgaacccgctgctgccgcgaaaaaggtgacttcaaaaaaa
aaagcccgcgtaaaaaagcttccaggattcatatctcctcagctagcagagctcgtcaaa
gagccgcctgaaggagaaagttgggtgcatgaaactaagtttgatggttatcgtacgcaa
gctcacatcgaaggtggaaaggtaactctttacacccgtaatggtcttaactggagtcaa
aaatatccaaccatcgcatctgaattaaaggatctgcccgtgagcaatgccatcctagat
ggtgaagtcgtatggttagacgatcaagggcgaagtgattttcaaaaattgcagaattct
ttgaaggccaaagaatcaagacgtttgatttactatgtttttgatttgttatacgtggat
ggcgtcgattgtaggtcctttccacttaaagaaagaaaacatcgactggaaaaaatcctg
gcagagtttgacaacaggatcattcgatatagtgagcacgtcgacggaagtggtgctgat
cttttcgaagctgcatgtaattatcaactggaaggtcttgtatctaaagatcttgatgct
ccttaccgcagcagcagaaacagtggctgggtaaaaacaaaatgcaaacttcatcaggag
tttgtgatcggtggttatacggtgggtgaaggctcgcgcaatgggggatttggtgccctt
ttgttaggagcttacgaggatggaaagcttcgttatgtcggaaaagtcgggacgggtttt
acagaacgttctttaatggacatacataagaaattaaagcctcgggaaatgacaaaaagc
ccgtttgatatagcttcgccaaaagggcgcggcgttcattacattaagccgggacttgtt
gcggaagtaagttttgggcagtggacttcagataagattttacggaccgccgtgtttcat
ggtctgcgtgaagataaacctgctaaagaaattcatattgagaataaaaaatcgttaaag
tcagtaatagttccgaaaaagaaagtctcgccaaaacagaaagctgataacgagaaatta
gcgctcactaatccggataaaattttatatagaaaagaaaaaataacgaaactgcagatt
gctagatattatcaagattttgctgaagtaattttgccgcatattgcgaatcgccccttg
gcattgttgcgatgcccggaaggttcagagaaaacttgtttcttccaaaagcacatcgct
ggaaaagttcctttagaatttattcccgtcaccatcgtcgaaagaagcgggccgaaggcg
tatttgactattgattctaaagaagggttgttgtctttgtcgcaaatgaatgcttttgaa
cttcacgcttggaactgtcacagtgatgccatcgaaaatccagatcagatcgtgatggat
ttcgacccgggtcctggtgtgcattggaagcaagttattgaagctgcattttctttaaaa
gaaattttagatggtctgcagttgaaaagctttgttaaggtgtctggcggaaaaggggtc
catgttcacattcctgtggcgccgatatattcctgggatcagattaaaactttttcgcac
acattaggtaaggaaatggcttcgcgcaatcctgaccgttatacagtgaacatggctaag
aaagttcgcgggaaaagaatctttgtggactatttgcgaaacggtcgcggggcaacagct
gtcgtgccttattccttgcgggcacgggcgaagtcagcagtggcgatgccgatcacttgg
gaagagctgaaaaccattgaagggcctgacgtcttcactttggaaaacgctattaaacat
ttaagtaaaagaaaagtggacccatggaaggacttcttcaaaaaagagcagcgaatcaat
attcttaagcccgtagtttcatcggcagcatag
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