Brassica rapa (field mustard): 103851409
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Entry
103851409 CDS
T03449
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103851409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
brp03036
]
103851409
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103851409
Chromatin remodeling factors
NuRD complex
103851409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
Chromo
Helicase_C
DUF1087
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
103851409
NCBI-ProteinID:
XP_033135190
LinkDB
All DBs
Position
A01:complement(2885114..2899395)
Genome browser
AA seq
1206 aa
AA seq
DB search
MTSLAGSRLRKRPDRRPLYTVDDSDDDDDFVQNKDQATEIVEGTVGREAVTPLTEMEKIL
DCQMRPTTSNDPDSSDSAAPKQVVVKQYLVKWKGLSYLHCSWVAEEEFQKAYKFIRRLRS
RVIKFHSTMESMSNSGDDFVAIHPEWTTVDRIIDCRGEGEDKEYLVKFKELSYDECYWES
ESDISTFQNEIQRFKDINSGHRRDKYVDHERNHEDFKQFDHTPEFITGSLHPYQLEGLNF
LRFTWSNRTHVILADEMGLGKTIQSIAFLASLFEENLAPYLVVAPLSTLRNWEREFATWA
PHMNVVMYGGTSQARTVVRDHEFYFPKGHNKMIGISGESRQDRIKFDVILTSYEMINVDT
EVLKPIKWKCMIVDEGHRLKNKNSKLFNSLKQYTSDHRILLTGTPLQNNLDELFVLMHFI
DGEKFGSLEEFQEQYKDIDQEEQISRLHKMLSPHLLRRVKKDVLKDMPSKKELILRVDLS
SKQKIIYKAIMTRNYKILAKRGAKISNVLMELRKACLHPYMVEGVESQIKNENEALKELL
ESSGKLQLLDQMMVKLKEQGHRVLIYSQFQHMLDLLEDYCAYKKWFYERIDGKVNGAERQ
ARIDRFNAKNSNRFCFLLSTRAGGVGINLATADTVFIYDSDWNPYADLQAMARAHRIGQT
EKVMIYRLISRGTIEEKIVQICKRKMLLEHLVVGKLKAPNLSQEELDDIIRYGSKELFAE
ENDEAGKFGKIHYDDAAIEKLLDRDHIDAEEDSVDDENENGFFKAFKVANFEFIDDNEAA
ASEEAQDIESKSSSENYWEYLLKDKYEVQQAEEVNALGKRKRNCKQKLGEDELAYLEASS
DNEEDEQTEAEDELAYLEVSSDDCVASGQGNQIAYWPWTPASSAYEEAKPMDGEAARQGN
QMAKRPYHRTRDTLEPIPLIEGEGRFLKVLGFNELQRKKFLTTLERYGVGNYDWKEFVDP
LKPRTYDEIRSYGLRFLKHIVEDKDVNSPTFSDGVPKEGLKCKDVLARIASVMLVQKKVK
HMEANPTNPVFSDRILHRFPGLRLRRAKFANEECDRILLSAVSKNGVGKWRALVNDIEFG
IYELVRKELNIPPTSFINANGIVKDPDIIITDHMRRRFLILEEAIINEFAEDYYFGPKPS
SLNRALKNGLLNQPIDFFSAKFRLLTERALHEFASKNISRNLSAIGTYVNVNMEDERVTE
VIVLDD
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgactagcttggctggtagtaggctacgtaaacggccagaccgtagaccattgtacacc
gtagatgattccgatgacgacgatgactttgttcaaaacaaggatcaggcgactgaaata
gttgaaggaactgtcggaagagaagcggttactcctcttaccgagatggaaaagattttg
gactgccaaatgcgtcctacgacatctaacgatccagattcatcagatagtgctgcacca
aagcaagttgttgtgaaacaatatcttgtgaagtggaaggggttatcgtacctacactgc
tcttgggtggccgaggaagagttccagaaggcttacaagtttattcgtcggttaagatcc
agggtgatcaaatttcattctacaatggagtcaatgagtaacagtggagatgattttgta
gccattcatccagagtggactactgttgaccggattatagattgccggggagaaggtgag
gacaaggagtatctggtgaagttcaaagaactttcttatgatgaatgttattgggaatct
gaatcagacatctcaacctttcaaaacgaaatccaaaggttcaaggatataaactctggt
catcgcagagataaatatgttgaccatgagagaaatcatgaagatttcaaacagtttgat
catactcctgaatttattacaggctcattgcatccgtaccagcttgaagggcttaacttt
ttgcggtttacatggtcaaaccgaactcatgtaatcctcgccgatgagatggggctaggt
aaaacaattcaaagcattgcctttttagcttctctttttgaggaaaacttggctccatat
ttggtagttgctcccctttctactctgagaaactgggagagagaattcgccacctgggca
ccacatatgaatgtggttatgtacggtggtacttctcaagctcgtactgttgttagagat
catgagttttactttccaaaaggtcataacaagatgattggaatcagtggagaaagtagg
caggacaggattaagtttgatgtcatcctcacgtcttatgagatgatcaacgtagacaca
gaagtcctaaaaccaatcaagtggaagtgcatgattgttgatgaaggccatcggttgaaa
aacaaaaactcaaagttgttcaattcgctgaagcagtatacgagtgaccatcgcattctt
ctgacaggaacaccacttcagaacaacttggatgagcttttcgtgctcatgcattttatt
gatggggagaagtttggaagtttggaggagtttcaggagcagtacaaagacatagatcaa
gaggagcagatatcaaggctccacaaaatgctgtctccccatctgctcagaagggtaaag
aaagacgtgctgaaggacatgccctctaagaaggaactcatcttgcgggttgatctgagc
agcaagcagaaaataatttacaaagctattatgacccggaactataaaatattagcaaaa
agaggtgctaagatatcgaatgtgctcatggaattgcggaaagcttgcttacatccctac
atggtggaaggtgttgagtcccagattaaaaatgaaaatgaagctttaaaagagctccta
gaatcctctggaaaattgcaacttctagaccaaatgatggtcaagcttaaagagcaagga
cacagagttctgatttactcacaatttcagcacatgttggacctacttgaagactactgt
gcttacaagaagtggttctatgaaaggattgatggaaaggttaatggagctgagaggcaa
gcacggattgatcgctttaatgccaaaaattcgaaccggttctgttttctgctttctaca
agagctggcggtgtagggataaaccttgcaactgctgatactgtcttcatttatgacagt
gattggaacccttatgcggatcttcaggctatggctagagctcatcgaattggccagact
gagaaggtaatgatttacaggctcataagccggggtactattgaagaaaaaattgtgcaa
atctgtaaaagaaaaatgcttctagagcatcttgttgtggggaaattaaaagcaccaaac
cttagccaggaagagttagatgacatcatcaggtatggttccaaggagctttttgctgaa
gagaatgatgaagcaggaaagtttggaaaaattcattatgatgatgctgctatcgaaaag
ttgctagaccgtgatcatatagatgctgaggaggactcagtggatgatgaaaatgaaaat
gggttttttaaagctttcaaggtagcaaactttgagttcatagatgataatgaggctgct
gcctcagaggaggcacaggatatagaaagcaagtcttcatcagaaaactattgggaatat
ttgttaaaagacaaatatgaagtgcagcaagctgaggaggtcaatgctcttggaaagagg
aagagaaactgtaagcagaagcttggtgaagatgagcttgcttacctagaagcgagctct
gataatgaagaagatgaacaaactgaagctgaagatgagcttgcttatctagaagtgagc
tctgatgattgtgtagcatctggacagggaaaccagatagcttattggccttggactcca
gcgagctctgcttatgaagaagccaaaccaatggatggtgaagcagctagacaaggaaac
caaatggctaaaaggccttaccataggactcgcgatactttggaaccaatacctttgata
gaaggagaagggagatttctcaaggtgttaggttttaacgagctgcaaaggaagaaattt
ttaacgactttggagaggtacggagttggcaactatgactggaaggagtttgttgatcct
ttaaagccgaggacctatgatgaaataagaagttatggattacgtttcttgaagcacatc
gtcgaagacaaagatgttaactctccaaccttttcagatggagtccccaaagaaggactg
aaatgtaaggatgtactcgccagaattgcttctgtgatgttagtacaaaagaaggtgaaa
catatggaagccaatccaacaaaccctgttttctctgaccgcattttacataggttccct
ggactaagattaagaagagcaaaatttgcgaacgaggaatgtgacaggatcctgttgtct
gctgtttccaagaacggggttggaaaatggagagcccttgttaatgacatagagtttggg
atctacgagctcgtccgaaaagaattgaacatccctcccacaagttttattaatgctaat
ggaatcgtaaaagatccggatataataattactgatcatatgagaagacggtttctgatt
cttgaggaggcgataataaatgagtttgcagaagactactactttggaccaaagccttca
tctctgaaccgtgctctaaaaaatggtctactgaatcagcccatcgattttttttctgct
aagtttcgactattaaccgaacgtgccttacatgagtttgccagcaagaacataagcagg
aacctaagtgccattggaacatatgttaatgtgaatatggaagacgaacgagtaactgaa
gtcattgtgctggacgactga
DBGET
integrated database retrieval system
