Brassica rapa (field mustard): 103864077
Help
Entry
103864077 CDS
T03449
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03022
Basal transcription factors
brp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103864077
09124 Replication and repair
03420 Nucleotide excision repair
103864077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103864077
03400 DNA repair and recombination proteins [BR:
brp03400
]
103864077
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103864077
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103864077
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103864077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
103864077
NCBI-ProteinID:
XP_009140088
UniProt:
M4E9P7
LinkDB
All DBs
Position
A04:10843752..10848642
Genome browser
AA seq
767 aa
AA seq
DB search
MGNGERGRSSKKMKYGGKDDHKMKNTQNEEYYLGDDADEDSRDGEGEKMNTDFSKLELKP
DHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV
GLETETIISVLNKLSKTKLPKDMIDFINASTANYGKVKLVLKKNRYFIESPFPEVLKKLG
NDVVISKARFYEPYGGDGFTVGKTSGELEAGHGELLNAAELAAAAEEKETHSFEIDPALV
ETVKQRCLPSELNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARS
GIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD
SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAQMFRKV
ISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGKIEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
FKVITSLPPADAGSSLSYHSQEEQLSLLAKVLNAGDDLVGLEQLEEDTDGMALQAARRRK
GLMSEMSGAKGFVYQEFNSGRHKSSGQQSRKPKDPTKRHQLFKKRFV
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacggtgaaagaggaagatctagcaagaagatgaagtacggtggcaaggatgat
cataagatgaagaacacccaaaatgaagagtactacctgggtgatgatgctgatgaagat
tctcgtgatggcgaaggagagaagatgaatactgattttagcaagttggagttgaagcca
gatcatggcaacagacccttgtgggcttgtgctgatggaaggattttcttggaaactttc
tctcctctctacaagcaggcttatgacttccttatcgcaattgctgagcccgtttgcagg
ccagagtcgatgcacgaatataatttaacacctcactctctgtatgctgctgtttccgtc
ggtcttgagacggaaaccatcatatccgttttgaataagctgtctaagactaagctaccc
aaggatatgattgatttcatcaatgcttctactgccaactacgggaaagtgaagctggtt
ttgaaaaagaatcggtattttattgaatccccgttccctgaggtgctgaaaaagcttggc
aatgatgttgttataagcaaagctagattttacgagccatacggcggtgatggattcaca
gtcggcaaaacaagcggtgaacttgaagcaggacatggggagctgttgaatgcagcagag
ttggcagctgctgcagaagagaaagaaactcactcgtttgagatagaccctgcactggtg
gagactgtaaagcagcgttgcttgccaagtgaattgaattaccccatgttagaggaatat
gacttcaggaacgacaacgttaatcctgatcttgacatggaactgaagccccatgctcag
ccgaggccgtaccaggaaaaaagtttgagcaaaatgtttgggaacggacgagcaagatct
gggattatagtgttgccttgtggtgctggtaaatctctagttggtgtttctgcagctgct
cgtataaaaaagagttgtctttgtttggctacaaatgctgtttcggtggaccagtgggcc
ttccagttcaagctgtggtctactataagagatgaccaaatatgccgtttcacttctgat
agtaaagagcgattccgtggaaatgctggtgttgttgtgacaacttataatatggttgcc
tttggtggtaaacgatccgaggaatcagagaagatcatagaagaaatgaggaacagagag
tgggggttgttactcatggacgaggtgcatgttgttccggcccagatgtttaggaaagtc
atcagtatcacaaaatcccactgcaagctaggacttacagccacccttgtgagagaagac
gaaaagattacagatttgaacttcctcattggcccgaaactatatgaagccaattggcta
gatttagttaaaggaggctttattgcaaatgttcagtgtgctgaagtatggtgtcctatg
accaaggaattttttgcagaatatctgaagaaagagaactctaagaaaaaacaggcactt
tatgtaatgaaccctaacaagttcagagcgtgtgagtttcttatacgtttccatgaacaa
caacgtggggataaaattattgtctttgcagacaatctttttgctctgacagagtatgca
atgaaactccgcaaaccgatgatttatggtgcaactagccatatcgaacgaaccaaaatt
ctagaggcgtttaaaaccagtaaagacgtgaacaccgtcttcttgtcaaaggttggtgat
aactctatagatattcctgaagctaatgtgatcatccagatttcgtcacatgctggttct
agacgtcaagaggctcagcgtctgggtcgtattcttagggccaagggtaaaattgaagat
agaatggctggtggaaaagaagagtacaatgcattcttctactcacttgtttctacagat
acgcaggaaatgtattattcaacgaagagacagcagttcttgatcgaccaaggttacagc
tttaaagttataacaagtcttccacctgctgatgccggttcgagcttaagctaccacagt
caagaagaacagttatcccttctcgccaaggtgttgaatgctggagacgacttggttggt
ttagagcaactggaagaagacacagacggaatggccctgcaagcggcgagacggaggaag
ggactgatgagtgaaatgtcgggtgcaaaaggatttgtgtaccaggaattcaactctggc
cgtcacaaatcttctggtcaacaatccaggaagcctaaagaccctacaaaacgacaccaa
ctcttcaagaaacgtttcgtgtaa
DBGET
integrated database retrieval system
