Brassica rapa (field mustard): 103870514
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Entry
103870514 CDS
T03449
Name
(RefSeq) cell division control protein 48 homolog A
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103870514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103870514
03009 Ribosome biogenesis [BR:
brp03009
]
103870514
04131 Membrane trafficking [BR:
brp04131
]
103870514
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
brp04147
]
103870514
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
103870514
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
103870514
Membrane trafficking [BR:
brp04131
]
SNARE
SNARE associated proteins
Others
103870514
Autophagy
Aggrephagy
Other aggrephagy associated proteins
103870514
Exosome [BR:
brp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
103870514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_14
AAA_22
AAA_33
TIP49
RNA_helicase
AAA_18
AAA_17
AAA_28
nSTAND3
Mg_chelatase
ATPase_2
Parvo_NS1
IstB_IS21
Vps4_C
Viral_helicase1
Zeta_toxin
ABC_tran
AAA_7
AAA_24
NB-ARC
NACHT
TsaE
DUF815
ResIII
UFD1
Zot
Motif
Other DBs
NCBI-GeneID:
103870514
NCBI-ProteinID:
XP_009146894
UniProt:
M4ELX5
LinkDB
All DBs
Position
A05:complement(25541643..25545156)
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AA seq
809 aa
AA seq
DB search
MSNPAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDT
ILIKGKKRKDTICIALADESCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGQRVHI
LPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVV
APDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTE
AALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWD
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNI
FKACLRKSPIAKDVDINALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSEN
PEAMEEDMDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFETN
AGSGATTGVADPFATSAAAAAADDDDLYN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacccagctgaatcttcagactcgaaatcgaagaaggattttagtactgctatt
ctggagaggaagaagtctcccaacagacttgtcgtcgatgaggccatcaacgatgataac
tccgtcgtgtctctccaccctgctaccatggagaagctccagctcttccgtggtgatacc
attctcatcaagggtaagaaaaggaaggacactatctgcatagctcttgctgatgagtct
tgtgaggagccaaagatcaggatgaacaaagtggtcaggtctaacttgagggttaggctt
ggtgatgttatctctgttcatcaatgccctgatgtcaagtacggacagcgtgtgcacatc
ttgcctgttgatgataccgttgaaggcgtgactggaaacctctttgatgcttacctcaaa
ccttacttccttgaggcataccgtccggtgaggaagggagatctcttcctagtgagagga
ggaatgaggagtgtggagttcaaggttattgagacggatcctgctgagtactgtgttgtt
gctccggacactgagattttctgtgagggagagccagtcaagagagaggacgaagagagg
cttgatgaagtgggttatgatgatgttggtggagtcaggaagcagatggctcagatcagg
gagcttgttgagcttcccttgaggcatccacagctgttcaagtcaattggtgttaagcca
ccgaagggaattctgctttacggaccacctgggtctggaaagactttgatcgctcgtgct
gttgctaacgaaactggtgcctttttcttctgtatcaatgggcctgagatcatgtccaag
ctggctggtgagagtgagagcaacctgaggaaagcgtttgaggaggctgagaaaaacgct
ccttcgatcatattcattgatgagattgactctattgcaccgaaaagagagaagactaat
ggagaggttgagaggaggattgtgtctcagctcctcacgctaatggatgggctgaaatct
cgtgcacatgttattgtcatgggagcaaccaatcgccccaacagtatcgacccggctttg
agaaggtttggaagatttgatagggagattgatattggtgttcctgatgagattggacgt
cttgaagttctcaggatccacacaaagaacatgaagcttgctgaagatgtggatctagaa
aggatctcaaaggacactcacggttatgtcggtgctgatcttgcagctctgtgcactgaa
gctgccctgcaatgcattagggagaagatggatgtgattgatttggaagatgactccata
gatgctgaaatcctcaattccatggcagtgaccaatgaacacttccacactgctctaggg
aacagcaacccatctgcacttcgtgaaactgttgtggaggtacccaatgtttcttgggat
gacattggaggtcttgagaatgtcaagagagagctccaagagactgttcaatacccagtc
gagcacccagagaagtttgagaaattcggtatgtctccgtctaagggagtccttttctac
ggtcctcctggatgtggtaaaacccttttggccaaagctatagccaacgagtgccaagca
aacttcatcagtgtcaaaggtcccgagcttctcactatgtggtttggagagagtgaagcc
aacgtccgtgaaatctttgacaaggcccgtcagtctgctccatgtgttctcttctttgac
gagctcgactccattgcgactcagagaggaggtggaagcggaggtgatggtggcggcgca
gcagatagagtcctgaaccagcttttgactgagatggatggaatgaacgccaagaagacc
gtcttcatcatcggagcaaccaacagacccgacattattgattctgctcttctccgtcca
ggaaggctcgaccagctcatttacattccactgccagatgaggattcccgtctcaatatc
ttcaaggcctgcttgaggaagtcacctatcgctaaagatgtggacatcaacgctctcgct
aagtacacacagggattcagtggtgctgatatcactgagatttgccagagggcttgcaag
tacgccatcagagaaaacattgagaaggacattgaaaaggagaagaggaggagcgagaac
ccagaagccatggaggaagatatggatgaagtatcagagatcaaagctgcacacttcgag
gagtcgatgaagtatgcacgcaggagtgtgagcgatgcagatatcaggaagtaccaagcc
tttgctcagacgctgcagcagtctagagggtttggttccgagttcaggttcgagactaat
gctggttcaggtgcaaccactggagtcgctgatccttttgccacgtctgctgctgctgct
gctgcggacgatgatgatctctacaattaa
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