Bradyrhizobium amphicarpaeae: CIT40_14115
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Entry
CIT40_14115 CDS
T05700
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
brq
Bradyrhizobium amphicarpaeae
Pathway
brq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT40_14115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brq03019
]
CIT40_14115
03009 Ribosome biogenesis [BR:
brq03009
]
CIT40_14115
Enzymes [BR:
brq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CIT40_14115
Messenger RNA biogenesis [BR:
brq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CIT40_14115
Ribosome biogenesis [BR:
brq03009
]
Prokaryotic type
rRNA processing factors
CIT40_14115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zinc_ribbon_9
Motif
Other DBs
NCBI-ProteinID:
AWM01057
UniProt:
A0A2U8PT89
LinkDB
All DBs
Position
complement(3425553..3428612)
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AA seq
1019 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESENRSQGRRRSRHRNSR
RRGHGERVRSEIVEGTDSTAQPVEGEALLTEGASHEGEHLHADAEHQGEHDHHEHGHHDH
HDHDHEEHAHDHHAHGDDHAHDHDHGHDHHEHHHVDETPAPVAAVGAEPVVAAEPQEAQT
FEAHASESHETHAEDLAEAVTASTEPADAVYGEAPHAEAAETTGEDDEDEDEDDEEAEEE
VVESVGGDDVLEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLA
GRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKR
DFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEISVAGEAGYREARD
FMKMLMPANVSAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSID
VNSGRSTREHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKL
SDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGGTGHVRSVSSVALQL
LRGLEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVTLSVIADPSVSGPQA
YLIDRGEQVHTLEAAKALLAAQAAASPPPLAEEAFDDEDGFDIETESEVETEESEGLAEE
AAGEAGSEQDGQRRKRRRRRRGRGGQRDGELREDSPATLPEPAIAAGEGDEDADTEQEGE
EGEEQAARGEQQGSADRRRRRGRRGGRRRRGSGEEGLAGSIGDELGTSQPSEASDAVADF
DGFGSEAAPSIAQAEHTAEPQVSQPEPRAEVQTEVAPAQPEPVAAEEEPADDKAARRRST
VREKVSFLSSSPSEPTAPVAQAPEPATPPAAEPAQEPASETPAAPRRAGWWSRRFGGGE
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaagagacccgggtcgtcgtggtc
cgcggcaatcgcgtcgaagagtttgatttcgagaccgcgcaacgcaagcaacttcgcgga
aatatctacctcgccaaggtcacgagggtcgaaccctcgctccaggccgctttcgtcgaa
tatggcggcaaccgccacggcttcctcgccttcagcgaaatccatcccgactattatcag
atcccggtcgccgaccggcaggcgctgatcgaggccgaggaacaggcccatcgcgaggcc
gaggaagagagcgagaaccgctcccagggccgccgccgctcgcgccaccgcaactcccgc
cgccgcggtcatggcgagcgcgtccgcagcgaaatcgttgaaggcaccgattccacggcc
cagccggtcgagggcgaggccctgctcaccgaaggcgcgtcgcacgaaggcgagcatctg
cacgccgacgcggagcatcagggcgagcacgatcaccacgaacatggccatcatgatcac
cacgatcatgaccacgaagaacacgcgcacgaccatcatgcccatggcgacgatcacgcg
catgatcatgaccatggccacgatcatcacgagcatcatcatgtcgatgagacccccgcg
cctgtcgccgccgtcggcgccgagcccgtggttgctgccgaaccgcaggaggcccagacc
ttcgaggctcacgcctccgagtcccacgagacgcatgccgaagatctcgccgaggccgtg
accgcttcgactgagccggccgacgccgtctacggcgaggccccgcatgccgaggctgcg
gaaacgaccggcgaagacgacgaggatgaggacgaggacgacgaggaagccgaagaggaa
gtcgtcgaatccgtcggcggcgacgacgtgctggaggaagtgccggagcgaaccttccgc
ccgcgccgccagtacaagatccaggaagtcatcaagcgccgccaggtgatgctggtgcag
gtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctacctctcgctcgcc
ggccgctatgccgtactgatgccgaacaccgcccgcggcggcggcatcagccgcaagatc
accagcgctcaggaccgctcgcgcctgaaggaagtggtgcaggatctggacgtgccggag
ggcatgggcatcatcttgcgcaccgccggcgccgcccgcaccaagcccgagatcaagcgc
gacttcgaatatctgatccggatgtgggaaacggtgcgcgacctgacgctgaagtcgcag
gccccgaccctcgtctacgaggaaggctcgctgatcaagcgctcgctgcgtgacctctac
aacaaggagatcgacgaaatctcggttgccggtgaagccggctaccgcgaagcccgcgac
ttcatgaagatgctgatgcccgccaatgtcagcgcggtgaagcagtatcgcgacggccag
ccgctgttctcgcgcatgggcgtcgaaagccagctcgacgcgatgttctcgccgactgtg
cagctgcgctccggcggctacatcgtgatcaaccagaccgaggcgctggtctcgatcgac
gtcaactccggccgctcgacccgcgagcaccatatcgaggacaccgcgctcaagaccaat
ctggaagcgtccgaagaggtcgcccgccagctccgtctgcgcgacctcgccggcctgatc
gtcatcgacttcatcgacatggacgagaagcgtaacaaccgtgcggtcgagcgcaagctg
tcggattgcctgcggcaggaccgcgcgcgcatccaggtcggccgcatctcccatttcggc
ctgctcgagatgtcgcgccagcgcatccgcgccagcgtgctcgagagctcgaccgacccg
tgcccgcattgcggcggcaccggccatgtccgctcggtgtcttcggtggcgctgcagctg
ctgcgcggcctcgaagagatcctgatgaagggcgcgacccacaatctggtggtccgcacc
cgcaccgacgtcgcactctatgtgctgaaccacaagcgcggccatctgcgcgacctcgag
aacggcttcaaggtgacgctgtcggtcatcgccgatcccagcgtgtcgggaccgcaggcc
tatctgatcgaccgcggcgagcaggtgcatacgctggaggccgccaaggcgctgctcgcg
gcgcaggccgcggcgagcccgccgccgctggcggaagaagcctttgacgacgaggacggt
ttcgacattgagaccgaatccgaagtcgagaccgaggaaagcgaaggtctcgctgaagag
gccgcgggcgaggcaggttccgagcaggacggccagcgccgcaagcgccgccggcgccgg
cgcggccgcggtggccagcgcgacggcgagttgcgtgaggatagcccagccaccctcccc
gagccggctatcgcggctggcgaaggcgatgaggatgccgacaccgagcaggagggcgaa
gagggcgaggaacaggcggcccgcggcgagcagcaaggcagcgccgaccgccgccgccgg
cgtggtcgtcgcggcggacgccgtcggcgtggcagcggcgaggagggtcttgccggctcg
atcggtgacgaactcggtaccagtcagccgtcggaagcatccgacgccgtggccgatttc
gacggcttcggcagcgaggctgcgccctcgatcgcgcaggccgagcacaccgccgagcct
caggtctcgcagcccgagccgcgcgccgaggtgcagaccgaggtggcgccggcccaaccg
gagcccgttgccgcagaggaagagcccgccgacgacaaggccgcgcggcgccgctccacg
gtccgggaaaaggtgagcttcctgtcgagcagcccgagcgagccgacagccccggttgcg
caggcgcctgagccggccactccgccggcagccgagcccgcgcaggaaccggcaagcgaa
acgccggccgcgccacgtcgcgccggctggtggtcacgccgcttcggcggcggcgaataa
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