Bradyrhizobium septentrionale: HAP48_0012860
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Entry
HAP48_0012860 CDS
T07866
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bsep
Bradyrhizobium septentrionale
Brite
KEGG Orthology (KO) [BR:
bsep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsep03019
]
HAP48_0012860 (hrpB)
Enzymes [BR:
bsep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HAP48_0012860 (hrpB)
Messenger RNA biogenesis [BR:
bsep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HAP48_0012860 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
AAA_30
ResIII
HA2_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UGY18239
LinkDB
All DBs
Position
complement(2315959..2318493)
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AA seq
844 aa
AA seq
DB search
MPRHFDSPLPIDAVLDELDRTLDGHNSAVLVAPPGAGKTTRVPLALLDAPWARAKKIIVL
EPRRIAARASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPEL
SGVAAVLFDEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVARLLGDAPVV
ESEGRAFPVETRYVGRKVDAPLERQMAETIATALRADAGSVLAFLPGAAEIRRTQTFLAE
RVHDASVEIVPLFGALDASVQDRAIAPAPKGTRKVVLATSIAETSLTIEGVRIVVDSGQA
RVPRYEPDIALTRLETVRASRAAVDQRRGRAGRIEPGVCYRLWDEPQTASLPAYTAPEIL
SADLSSLVLDLAQWGVSDPGSLAFLDPPPGPALKEAKSLLSELGALDGDGRITEEGKSLR
ALALPPRLARMIVDSARLSAGEEAAEIAAVLTERGLGGDSVDLDHRLDQFRRDRSQRASS
ARSMAERWASQVERSERLSSPSPLVGEGRGGGPAKLVSADRGDLSTGVMLAFAFPDRVAK
NRGNGSFVLANGRGAAVEQTSALARLPYIAVAELTGTAASGRILLAAPITQDEIEQRFAD
QIETVEEVTFDRGAMALRARRRRSLHAITLSEAPMSLQPSAETARIFADGLIAAGLDRLP
WSKHSKQWRDRIMFLRKAEDESWPDLSDAALAARAEDWLVPALYDKTALKDLSAGDLSDA
LMALLPWELRARLDREAPTHFEAPTGTQLAIDYEAEQGPTIAVRLQELFGLNIHPSIAKG
AVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVRSDLRGRYPRHPWPEDPASALPTRRVK
PRGT
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
ttgccacgccatttcgatagcccgctgccgatcgacgccgtgctcgatgagctcgaccgc
acgctcgatggccataattccgcagtgctggtcgcgccgccgggcgccggcaagaccacg
cgcgtgccgctggccttgctcgatgcgccctgggccagggctaagaagatcatcgtgctg
gagccgcgccgcatcgctgcgcgcgccagcgccgagcggatggcgaagacgctcggtgag
cgcgccggcgaaaccgtcggctatcgcgtgcgcttcggctcaaaggtgtcgcgcgcgacc
cggatcgaggtcgtcaccgaaggcatcttctcgcgccagatcctcgacgatcccgagctc
agcggcgtcgccgcggtgctgttcgacgaattccacgagcgctcgctcgacgccgatctc
gggctggcgctggcgcgcgacgcgcagaccggcctgcgcgaggatctgcgcatcctcgtg
atgtcggcaacgctcgacggcgcgcgggtcgcaagactgctcggcgatgcgcctgttgtc
gagagcgagggccgcgcctttccggtcgagacccgttatgtcggccgcaaggtggacgcg
ccgctggagcggcagatggccgagacgatcgcaaccgcgctgcgcgccgatgccggctcg
gtgctcgccttcctgccgggcgcggccgagatccgccgcacccagaccttcctcgccgaa
cgcgtgcatgacgcgtcggtcgagatcgtgccgctgttcggcgcgctcgatgcgagcgtg
caggatcgtgccatcgctccggcgccgaaaggcacgcgcaaggtggtgctggcgacctcg
atcgccgagacctcactgaccatcgagggcgtgcgcatcgtggtggattccggccaggcg
cgggtgccgcgctacgagcctgacattgcgttgacccggctcgagaccgtgcgggcctcg
cgcgcagcggtggatcaacggcgcggccgcgccggccgcatcgagcccggcgtctgctac
cgtctgtgggacgagccgcagaccgcgtcgcttccggcctataccgcgcccgagatcctc
tccgccgacctgtcctcgctggtgctcgacctcgcgcaatggggcgtcagcgatcccggc
agccttgccttcctcgatcccccgccgggtccggcgctgaaggaagcgaagtcgctgctg
tcagaactcggtgcgctcgacggcgacggccgcatcaccgaggagggcaagagcctgcgc
gcgctggcgctgccgccgcggctggcgcgcatgatcgtggattccgcccgcctcagtgca
ggcgaggaagcggccgagatcgcggcggtgctgaccgagcgtgggctcggcggcgacagc
gtcgatctcgaccacaggctcgaccagttccgccgcgaccgttcgcagcgggcatcgagc
gcgcgcagcatggccgaacgctgggcctcgcaggtggagaggtctgagagactttcttct
ccctccccccttgtgggggagggccggggaggggggcccgcaaagctagtgtctgccgat
cgcggcgatctctccaccggcgtcatgctggccttcgcgttcccggaccgcgtcgccaaa
aaccgcggcaatggcagcttcgtgctggccaatggccgcggcgccgcggtcgagcagacg
tcagcgctggcgcggcttccctatatcgcggtcgccgaactgacgggtacagccgcgagc
ggccgcatcctgctggcggcgccgatcacccaggacgagatcgaacagcgcttcgccgac
cagatcgagactgtggaagaggtaacgttcgaccgcggcgcgatggcgctgcgcgcccgg
cgcaggcgctcgctgcatgcgatcacgctgtcggaagcgccgatgtcgctgcagccctcg
gccgagaccgcacgcatcttcgccgacggcctgatcgcggcgggcctcgaccggctgccg
tggtccaagcattcgaagcaatggcgcgaccgaatcatgttcctgcgcaaggccgaggac
gagagctggcccgatctgtcggatgccgcgcttgccgcgcgtgccgaggactggctggtg
cctgcgctgtacgacaagaccgcgctgaaggatttgtccgccggcgatctgtccgatgcg
ctgatggcgctgctgccgtgggaattgcgcgcccggctcgaccgcgaggcgccgacgcat
ttcgaggcgccgaccggaacacagcttgcgatcgattacgaggccgagcagggcccgacc
attgcggtgcggttgcaggagctgttcgggctcaacatccatccctcgatcgccaagggc
gcggtgccgctggtgctggaactgctgtcgccggcgcagcggccggtgcaggtgacgcgc
gatctgccgggtttttggcgcggcagctacgccgctgtccgctccgacctgcgcggccgc
tatccgcgccacccctggccggaagatcccgccagtgcgctgccgacaaggcgcgtgaaa
ccgcgcggcacgtga
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