Bacillus subtilis subsp. subtilis 168: BSU19220
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Entry
BSU19220 CDS
T00010
Symbol
yocI
Name
(RefSeq) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bsu
Bacillus subtilis subsp. subtilis 168
Pathway
bsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSU19220 (yocI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsu03019
]
BSU19220 (yocI)
03400 DNA repair and recombination proteins [BR:
bsu03400
]
BSU19220 (yocI)
Enzymes [BR:
bsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSU19220 (yocI)
Messenger RNA biogenesis [BR:
bsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSU19220 (yocI)
DNA repair and recombination proteins [BR:
bsu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BSU19220 (yocI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-GeneID:
939671
NCBI-ProteinID:
NP_389803
Pasteur:
BG13522
BSORF:
BG13522
UniProt:
O34748
A0A6M3ZBW7
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Position
complement(2094010..2095785)
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AA seq
591 aa
AA seq
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MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGT
TIVISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLT
SIEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATP
EVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIR
FVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLK
KLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDTRAAHDVTREAQMVLSCIIRM
KERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFV
VFSDQTLKEMSGKQPVNDDELLSIKGVGEQKRAKYGRLFLQEIQAYARMTD
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgttacatagagcccaatcccttctggctcattattttggttatgagaagtttcggagc
ggccaagatgaagcgatccgcttggtgacggaagcgaggcaaaatacggcctgcattatg
ccgacgggaggcggcaaatcgatttgctatcagattccggcattaatgtttgaagggacg
acgatcgtcatttcaccgttgatttccttgatgaaggatcaagttgatgcgttagaagaa
gcggggattaacgccgcctacattaacagcacacaatccaatcaggaaatatatgagagg
ctgaacggactcaaagaaggggcttataagcttttttacattacaccagagcgactaacg
tccatagagtttatccggattttgcagggcatagatgttcctttggtcgcaatagacgag
gcgcattgtatttctcaatggggccatgatttcaggccaagctacaggaatattgaaatc
ttgttccgtgaattacacgacaagcctgtcatcatggcgttaacagcaacagccacaccc
gaggttcatgatgatatttgcaaacagctgcatattcaaaaagaaaacacggtatatacc
ggattttcccgagagaatttaacctttaaagtagtaaaaggagaaaataaagatcggttt
atagacgaatatgtgcaaaacaacaggcatgaagcaggaattgtctatacagcgaccaga
aaagaagctgatcggatatatgagagattgaaacgaaatcaggtcagggcaggccggtat
catggaggtttggctgatgatgtgagaaaagagcagcaggaaagatttcttaatgatgag
cttcaagtgatggtggcaacctctgcttttggaatgggtattgataaatcaaatatcaga
tttgttctgcatgcacaaatcccgaaagatatggaaagctattatcaagaggcaggacga
gctggacgggacggtcttgccagtgaatgtgttctcctgttttcaccgcaggatattatg
gtgcagcgcttcttaattgagcaatcagaacatgaagagaaacaaaagcaggatttaaaa
aagctgagacaaatggtcgactactgtcatacggaagattgtctgcagcgttttatcctt
atgtatttcggagaaaaggagcctgatgcgtgcggacagtgcggaaactgtaccgataca
agagcggcccatgacgtgacgcgggaggcgcaaatggtcttatcttgtatcattcgcatg
aaagaacggtttggcaagacgatggttgcccaggtgcttgccggctccaaaaataaaaaa
gttcttgaaaacggcttttccgacctttcaacatacgggatattaaaacaccaatccgtt
ggcgaaatcagtgattttatcgaatttcttatttctgacgacttcatcaggatgtcagac
ggaacgtttccgactctttttgtcagcagtaaaggaaggaatgtgctgaaaggagaatta
tcagtagcgagaaaagaagcgttaaaagcggcagcgattactgaaaatgacgagctattt
gaacgattgcgcatggttcggaaagaaattgcggctgagcagggtgttccgccatttgtt
gttttctctgaccaaacgttaaaagaaatgtcaggaaaacagcccgtaaatgatgatgaa
cttttgtctataaaaggagtcggagaacaaaaaagagcaaaatacggccggcttttttta
caagaaatacaggcttatgcaaggatgacagactaa
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