KEGG   Bifidobacterium subtile: BS3272_06520
Entry
BS3272_06520      CDS       T07068                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
bsue  Bifidobacterium subtile
Pathway
bsue03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bsue00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BS3272_06520 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsue03400]
    BS3272_06520 (uvrB)
DNA repair and recombination proteins [BR:bsue03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BS3272_06520 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BS3272_06520 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_22 UB2H AAA_16 AAA_5 nSTAND3 ZapA AAA_28 AAA_7 DUF87 Pox_A_type_inc KfrA_N
Other DBs
NCBI-ProteinID: QOL35615
LinkDB
Position
complement(1524407..1526518)
AA seq 703 aa
MGFNIERADKPFVVKSPYHPSGDQPQAIDELAARIENGENDVVLMGATGTGKTATTAWLI
EKLQRPTLILEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDS
NINDDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLEEGQQIDRDTLL
RKFVDMQYKRNDIAFTRGTFRVRGDTVEIIPVYEELAVRIEFFGDEIDRISTLHPLTGDV
IAHEASVHIFPASHYVAGPERMERALKDIKNELDGRVAELHKQGKELEAQRLTMRTTYDL
EMLTQVGVCSGIENYSRHFDGRDPGTAPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGD
ASRKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTIYLSATPGDYELGLSDGVVEQIIRP
TGLVDPKIEVRPIEGQIDDLLAEIKDRVARHERTLVTTLTKKMAEDLTDYLLERGIKVEY
LHSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSL
IQTIGRAARNVSGTVLMYADEMTDAMHKAIDETNRRRDKQIAYNTEHGIDPQPLIKKISD
VNDMLAKEDVDTQTLLEGGYRNAGKAGNTHLGLPNFNQDEADKRHEEILKAGLPAQDLAD
LIRQMSEQMHTAAEQLQFELAARLRDEIRDLKKELRQITEAQK
NT seq 2112 nt   +upstreamnt  +downstreamnt
atgggattcaatatcgagcgcgcggacaagcccttcgtcgtcaaatcgccctaccatcct
tcgggcgaccagccgcaggccatcgacgagctggcggcgcgcatcgagaacggcgagaac
gacgtggtccttatgggcgcgacgggaaccggcaaaacggcgaccaccgcatggcttatc
gagaagctgcaacgccccacgctgatcctggagccgaacaagaccctcgccgcgcagctg
tgcgccgaattccgcgagctcatgcccgacaacgccgtgagctatttcgtgtcatattac
gactactaccagcccgaagcctacattccgcagacggacacctacatcgagaaggattcg
aacatcaacgacgatgtggagcggctgcgccatgcggccaccgccaatctgctcacccgg
cgcgattgcgtcgtcgtggccacggtctcctgcatctacggcctgggcacgcccgaggaa
tacgccggccgcatgctcttcctggaagagggccagcagatcgatcgcgatacgctgctg
cgcaaattcgtcgatatgcagtacaagcgcaacgacatcgccttcacgcgcggcaccttc
cgcgtgcgtggcgacaccgtcgagatcattccggtctacgaggagctcgccgtgcgcatc
gagttcttcggtgacgagatcgatcgcatctcgaccttgcatccgcttaccggcgacgtg
atcgcccatgaggcatccgtccatatcttccccgcctcgcactatgtggccggccctgaa
cgcatggaacgggccttgaaagacatcaaaaacgaacttgatggccgcgtcgccgagctg
cacaagcagggcaaggaattggaagcccagcggctgacgatgcgcacgacctatgacttg
gagatgctcacgcaggtgggtgtgtgctccggcattgaaaattattcgcggcatttcgac
ggccgcgaccccggcaccgcgccgcatacgctgcttgatttcttcccggacgacttcctg
ctggtcatcgacgaatcgcatgtcaccgtgccccagatcggcgcgatgtacgagggcgat
gccagccgcaagcgcaccttggtcgagcacggtttccgcctgccctccgcgatggacaac
cggccgctcaaatggcctgagtttctgcagcgcgtcggtcagaccatctacctgtccgca
acgcccggcgactacgagctggggctttcggacggcgtcgtggagcagatcatccgcccg
accggtctggtcgaccccaagatcgaagtgcgcccgatcgaggggcagatcgacgacctg
ctcgccgagatcaaggaccgcgtcgccaggcacgagcgcaccttggtgacgacgctgact
aagaagatggccgaggatctgacggactacctgctggagcgcggcatcaaggtcgaatac
ctgcattccgacgtcgacacgctgcgccgcgtggagctgctgcgcgagctgcgcgaaggc
aagatcgacgtcatcgtgggcattaacctgctgcgcgaaggcctggacctgccggaagta
tcgttggtggcgattctcgatgccgacaaggaaggcttcctgcgctcctatcgctcgctc
atccagacgatcggacgcgcggcccgcaacgtgtcgggtaccgtgctcatgtacgccgac
gagatgaccgacgcgatgcacaaggccatcgacgagacgaatcgccggcgcgacaagcag
atcgcctacaacaccgagcacggcatcgacccgcagccgctcatcaagaagatcagcgac
gtcaacgacatgctcgccaaggaggacgtcgacacccagaccctgctcgaaggcggctac
cgcaatgccggcaaggcgggcaacacgcatctgggcttgccgaacttcaaccaggacgag
gccgacaagcgccatgaggagatccttaaggccggactgcccgcgcaggatctcgcggac
ctgattcggcagatgagcgagcagatgcacaccgccgccgagcagctgcaattcgagctc
gcagcccgtctgcgcgacgagattcgcgatctcaaaaaggagctgcgccaaatcaccgag
gcgcagaagtga

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