Bos taurus (cow): 520046
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Entry
520046 CDS
T01008
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bta
Bos taurus (cow)
Pathway
bta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
520046 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bta03041
]
520046 (DHX38)
Enzymes [BR:
bta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
520046 (DHX38)
Spliceosome [BR:
bta03041
]
Complex C
Other components
Step II factors
520046 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
T2SSE
nSTAND3
PhoH
AAA_30
Microtub_bd
Flavi_DEAD
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
520046
NCBI-ProteinID:
NP_001069266
Ensembl:
ENSBTAG00000013265
VGNC:
57044
UniProt:
Q17R09
LinkDB
All DBs
Position
18:complement(39009915..39027609)
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AA seq
1227 aa
AA seq
DB search
MEDSGEDASLHRLEGTDVDSQVGGLIFKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRK
EREEKDDGEDKKKSRISSYKDWEESKDDQRDAEAEDSDQAGRSGRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKDEKDRKKERSRDRDCDRKRDRDERDRSRHSG
RSERDGGSDRSSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYR
DSERSHRPSSRDRDRSVRSRYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDG
EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSDDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG
VKKEEEPDKSLTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLSYLNVYLQWKN
NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR
STKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggaggacagtggtgaggatgcctcgctccatcggttggaaggcactgacgtggactct
caggttggcggccttatttttaagaccaaaagtgcggctagtgagcagcatgtcttcaag
gcccctgcaccccggccttcattgctgggactggacttgttggcttctctgaagaggaag
gagagagaggagaaggatgatggcgaggacaagaagaagtccagaatctcttcgtacaag
gattgggaagagagcaaggatgaccagagggacgctgaggcagaagacagtgaccaggct
ggccgaagtggccgaaaagacaggcattaccgatcagcccgggtggagactccatcccat
cctggtggtgtaagtgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg
gagcatggcgtctatgcctcatccaaagacgaaaaggatcggaagaaggagaggtcacgg
gatcgagactgtgaccgcaagagagacagagatgagcgggacagaagcaggcacagcggc
agatcggagcgagatggagggtcagatcgcagcagcagaagaaatgaacccgagagcccc
cgacaccggcctaaagatgctgccaccccttcacggtctacctgggaggaagaggacagt
ggctatggctcctcgaggcgctcacagtgggaatcgccctcccccacgccttcctatcgg
gattccgagcggagtcatcggccgtccagtcgagacagggacaggtctgtgaggagcagg
tattcagatgacacccctctgccaaccccatcctacaaatacaacgagtgggccgatgac
agaagacacctggggtccaccccacgtctgtccaggggccgagggagacgtgaggatggc
gaagaaggaatttcatttgacacagaagaggaacggcagcagtgggaggatgaccagagg
caagccgaccgggattggtacatgatggacgaggggtatgatgagttccacaaccccctg
gcctactcctccgacgactacgtgaggaggcgggagcagcacctacacaaacagaagcag
aagcgcatttcggctcagcggagacagatcaatgaggacaacgagcgctgggagaccaac
cgcatgctcaccagcggggtggtgcaccggctggaggtggacgaggacttcgaggaggac
agcgcggccaaggtgcacctcatggtgcacaacctggtgccgccctttctggacgggcgc
atcgtcttcaccaagcagccggagcctgtgattccagtcaaggacgccacttcagactta
gccatcattgctcggaaaggcagtcaaacagtgcggaaacacagggagcaaaaggagcgc
aagaaggctcaacacaaacattgggaattggctggaaccaaactgggagatataatgggc
gtcaaaaaagaagaagagccggataaatctctgaccgaggatgggaaagtggactacagg
acagagcagaagtttgccgaccacatgaagaagaagagcgaggccagcagcgagtttgcc
aagaagaagtcgattctggagcagaggcagtacctgcccatcttcgctgtgcagcaggaa
ctcctcacgatcatcagagacaacagcatcgtgatcgtggttggggagacagggagtgga
aagaccacacagctgacccagtacttgcatgaagacggctacacggactatgggatgatc
ggatgcacccagccccgccgtgtggccgccatgtcggtggccaagagagtcagtgaagag
atggggggaaacctcggtgaggaggtgggctatgccatccgcttcgaagactgcacttca
gaaagcaccttgatcaagtacatgactgatggcatcctgctgagagagtccctgcgggaa
gcggacctggatcactacagcgccatcatcatggacgaggcccatgagcgctccctcaac
accgacgtgctcttcgggctgctccgggaggtggtggctcggcgctcagacctgaagctc
attgtcacatcagccaccatggacgcagagaaatttgcctccttttttgggaacgtcccc
atcttccacatccctggacgtaccttccctgtggacattctcttcagcaagaccccgcag
gaagactacgtggaggccgcggtgaagcagtccctccaggtgcatctgtcgggggccccc
ggggacatcctcatcttcatgcctggccaagaggacattgaggtgacctcagatcagatc
gtggagcacctggaagaactagagaacgcgcccgccttggccgtgctgcccatctactcg
cagctgccctctgacctccaggccaagatcttccagaaggctccagatggcgtccggaag
tgtattgtcgccactaacattgctgagacctccctgactgtcgacggcatcatgtttgtt
atcgattccggttattgtaagttaaaggtcttcaatccccggattggcatggatgctctg
cagatctaccccatcagccaggccaatgccaatcagcggtcgggacgagccggcaggacg
ggcccaggtcagtgtttcagactctacacccagagtgcctacaagaacgagctcctgacc
accacggtgcccgagatccagcggaccaacctggccaacgtggtgctgctgctcaagtcc
ctgggggtgcaggacctgctgcagttccacttcatggacccgcccccggaggacaacatg
ctcaactccatgtatcagctctggatccttggggccctggacaacacaggtggtctgacc
tcgacggggcggctgatggtggagttcccgctggacccggccctgtccaagatgctcatc
gtgtcctgtgacatgggctgcagctccgagatcctgcttatcgtctccatgctctcggtc
ccagccatcttctacaggcccaagggccgagaggaggaaagcgatcaaatccgggagaag
ttcgcagtccctgagagtgaccacctgagctacctgaacgtctacctgcagtggaagaac
aataattactccaccatctggtgtaatgatcatttcatccacgccaaggccatgcggaag
gtccgggaggtgcgggctcagctcaaggacatcatggtgcagcagcggatgagcctggcc
tcgtgtggcactgactgggacatcgtcaggaagtgcatctgtgctgcctatttccatcag
gcagccaagctcaagggaatcggggagtatgtgaacatccggacaggcatgccctgccac
ctgcaccctaccagctccctctttggaatgggctacacccccgactacattgtgtatcac
gagttggtcatgaccaccaaggagtacatgcagtgtgtgactgccgtggacggagagtgg
ctggcagagctgggccccatgttctacagcgtgaaacaggctgggaagtctcggcaggag
aaccgccgacgggccaaagaggaagcgtctgccatggaggaggagatggcactggctgag
gagcagctgcgggcccggcggcaggagcaggaaaagcgcagcccgctgggcagcgtcagg
tctacgaagatctacactcctggtcggaaggagcagggggaacctatgaccccccgccgc
acgccagcccgctttgggctctga
DBGET
integrated database retrieval system
