Bordetella trematum: SAMEA390648701240
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Entry
SAMEA390648701240 CDS
T04322
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
btrm
Bordetella trematum
Pathway
btrm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
btrm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA390648701240 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
btrm03021
]
SAMEA390648701240 (rpoB)
03400 DNA repair and recombination proteins [BR:
btrm03400
]
SAMEA390648701240 (rpoB)
Enzymes [BR:
btrm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA390648701240 (rpoB)
Transcription machinery [BR:
btrm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA390648701240 (rpoB)
DNA repair and recombination proteins [BR:
btrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA390648701240 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
SAI68409
UniProt:
A0A157PUE1
LinkDB
All DBs
Position
1:1318331..1322443
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQAETISAERLNEGLQAAFTSI
FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLMDREVSKPTIKE
VKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDVLFFRVDRRRKMPVSILLKAIGMTPEAILAHFFDFDNFELKSEG
AMMEFVPERWKGEMARFDITDRSGKVIVEKDKRINAKHLRDLAAAGIQRISVPEEFLYGR
VLAKNVVDADTGELIAHANEEITESVLANMRAAKVLDLQALYTNDLDRGPYISQTLRTDD
TADQTAARVAIYRMMRPGEPPTEEAVEALFQRLFYSDETYDLSRVGRMKVNSRLGRGDDA
SGPMTLTDEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
IDGRVSDQIDYLSAIEESHYVIAQANAALDEEGRFVDDLVACREAGETMLTAPSNVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT
TVQALRGGLVDHVDAERVVIRVNDDENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKRG
DRVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSVHIE
ELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIGAEVSADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKLLVGKTVNGGPRKLAKGATITKAYLEDLDRWQWFDIR
LADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPIEDMPHMADGTTVDIVLNPLGVPSRMNVGQVLEVHLGWAA
KGVGQRIAELLLEERDAQVKDIRAYLEKVYNTTGAGAHIETLTDDEVIELAHNLKKGVPF
ATPVFDGATEEEIGIMLKLAYPDPVAEHMQLTPSRSQAWLFDGRTGEQFERPVTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtacaccgaaaaaaagcgcatccgcaaaagcttcgccaagcgtgaagac
gttcaaaacgttccttttctgcttgcgacgcagcttcaatcctacctcaccttcctgcaa
gccgagacgataagcgcagagcgtctgaatgaaggcttgcaggcagcgttcacgtcgatt
ttcccgatcgtcagccacaacgggatggcgcgcttggagttcgtcagctatgcgcttggc
gaaccggtgttcgatgtcaaggaatgtcagcagcggggcttgacctacgcttcgccgctg
cgcgccaaggtgcgcctggtgctgatggaccgtgaggtcagcaagcccaccatcaaagag
gtcaaggaacaggaagtgtacatgggcgaaattccgctcatgaccagcacgggttccttt
gtcatcaacggtaccgagcgtgtcattgtgtcccagctgcaccggtcgccgggcgtgttc
ttcgaacacgaccgcggcaagacgcacagctcgggcaagctgctgttctcggcccgcgtg
attccctaccgcggttcgtggctggatttcgagttcgatccgaaggacgtgctcttcttc
cgtgtcgaccgccgccgcaagatgcccgtgagcattctgctcaaggccatcggcatgacc
ccggaagcgattctggcccacttcttcgacttcgacaatttcgagttgaagagcgaaggc
gcgatgatggaattcgtgcccgagcgctggaagggcgagatggcgcgttttgacatcacc
gatcgcagcggcaaggtgatcgtcgagaaggacaagcgcatcaacgccaagcacctgcgc
gatctggctgccgccggcatccagcgcatttcggtgcctgaagaattcctctatggccgc
gtgctggccaagaacgtggtcgacgccgacaccggcgaactgatcgcgcacgccaacgaa
gaaatcaccgaaagcgtgctcgccaacatgcgcgccgccaaggtgctggatctgcaggcg
ctgtacaccaacgacctggatcgcggtccctacatctcgcagaccctgcgcacggacgac
accgccgatcagaccgccgctcgcgtggcgatctatcgcatgatgcgtcccggcgaaccc
ccgaccgaagaagcggtcgaggccttgttccagcgcctgttctacagcgacgagacctac
gatctgtcgcgtgtgggccgcatgaaggtcaacagccgtctgggccgtggcgatgacgcc
agcggtcccatgacgctgaccgacgaggacatcctcgagacgatcaaggtgctggtcgag
ctgcgtaacggccgtggccagatcgatgacatcgatcacctgggcaaccgtcgcgtgcgc
tgtgtcggcgaactggccgagaaccagttccgcgccggcctggtgcgcgtggaacgtgcc
gtcaaggagcgtctgggccaggccgagaccgagaacctgatgccgcacgatctgatcaac
tccaagccgatctcggctgccatcaaggagttcttcggttcgagccagctgtcgcagttc
atggaccagaccaacccgttgtccgagatcacgcacaagcgtcgcgtctcggccctcggc
ccgggcggtctgacccgcgagcgtgccggcttcgaggtgcgcgacgtgcacccgacccac
tatggccgcgtctgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaactcg
atggcgctgtatgcgcgcctgaacgagtacggcttcctggaaaccccgtaccgcaagatc
atcgacggccgcgtgagcgatcagatcgattatctgtcggccatcgaagaaagccattac
gtcatcgcgcaggccaacgccgcgctcgatgaggaaggccgtttcgtcgatgacctggtg
gcttgccgtgaagccggcgaaaccatgctgacggcgccgagcaacgtgcactacatggac
gtcgccccgtcgcagatcgtgtcggtggctgcctcgctgattcccttcctggaacacgac
gacgccaaccgtgctctgatgggcgccaacatgcagcgtcaggcggttccctgcctgcgt
ccggaaaagccgctggtcggcaccggtatcgagcgcaccgtggcggtggactcgggcacg
accgtgcaagccctgcgtggcggcctggtcgaccacgtcgacgccgagcgtgtggtgatc
cgcgtcaacgacgatgaaaacgtcgctggcgaagtgggtgtggatatctacaacctgatc
aagtacacccgctcgaaccagaacaccaacatcaaccagcgtccgatcgtcaagcgtggc
gaccgtgtcgccaagggtgacgtgctggccgatggcgcatcgacggacctgggcgaactc
gctctgggccagaacatgctgatcgcgttcatgccctggaacggctacaacttcgaggac
tcgatcctgatctcggagaaggtcgtcgcggatgatcgctacacttcggtgcacatcgaa
gagctgactgtggtcgctcgcgacaccaagcttggtcctgaggaaatcacgcgcgacatc
agcaacctggctgaaacccagctcaatcgtctggatgattccggcatcgtctatatcggc
gccgaagtcagcgccgacgacgtgctggtgggcaaggtcacgcccaagggcgagacccag
ctgacgccggaagaaaagctgctgcgcgcgattttcggcgagaaggcttccgacgtgaag
gacacctcgctgcgcgtgccctcgggcatgaccggcaccgtcatcgacgtgcaggtgttc
acgcgtgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgatgaactgcgc
cgctaccgccaggacctgaacgaccagctgcgcatcgtcgagaacgaccagttcgatcgt
atcgagaagttgctggtcggcaagaccgtcaacggcggcccgcgcaagctggccaagggc
gcaaccatcaccaaggcctatctggaagatctggatcgctggcagtggttcgatatccgc
ctggccgacgagccgcatgccgtggtgctggagcaggccaaggaatcgctggagcagaag
cgtcaccagttcgatctcgccttcgaagagaagcgcaagaagctgacgcagggcgacgag
ctgcccccgggcgtgctgaagatgatcaaggtctatctggccgtcaagcgtcgcttgcag
ccgggtgacaagatggccggccgtcacggtaacaagggtgtcgtttcgcgcatcaccccg
atcgaagacatgccgcacatggctgacggcaccaccgtggacatcgtgctgaacccgctg
ggcgtgccgtcgcgcatgaacgtgggtcaggtgctcgaggttcacctgggctgggctgcc
aagggcgtgggccagcgtatcgccgagctgttgctcgaagagcgcgacgctcaggtcaag
gacatccgtgcctacctggagaaggtctacaacacgaccggcgccggcgcgcacatcgag
accctgaccgatgacgaagtcatcgagctggcgcacaacctgaagaagggcgtgcctttc
gccacgccggtgttcgacggcgcgaccgaagaagaaatcggcatcatgctcaagctggcc
tacccggatccggttgccgaacacatgcagctgacgccttcgcgcagccaggcgtggttg
ttcgacggccgtaccggcgagcagttcgagcgcccggtcaccatcggctacatgcactac
ctgaagctgcatcacctggtcgatgacaagatgcacgcacgttcgaccggcccgtactcg
ctcgttacccagcagccgctgggcggcaaggcgcagttcggtggccagcgcttcggggaa
atggaagtgtgggcgctggaagcctatggtgccgcctacaccctgcaagaaatgctgacg
gtgaagtctgacgacatcaccggccgcaccaaggtttacgaaaacatcgtcaagggtgat
cacgtgatcgacgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgttcg
ctggccctcgacatggatttggagcgtaactaa
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