Burkholderia sp. CCGE1001: BC1001_0035
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Entry
BC1001_0035 CDS
T01424
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
bug
Burkholderia sp. CCGE1001
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bug03009
]
BC1001_0035
Enzymes [BR:
bug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BC1001_0035
Ribosome biogenesis [BR:
bug03009
]
Prokaryotic type
rRNA helicases
BC1001_0035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ADX53501
LinkDB
All DBs
Position
1:34809..36212
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AA seq
467 aa
AA seq
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MNSPITAGAPFNQLPLPAAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKT
AAFSLALLARLDARKFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRP
QTASLEHGAHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQC
PKERQTLLFSATYPEGIVKLSQQFLRNPKEVKLAERHDDTKIRQRFYEVSEDERLHAVGL
LLNHYRPVSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSV
LVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVG
GIEQAQKREVEWHKLSELTSTSNEPLLPPMETLQILGGRKEKIRPGDVLGALTGEAGFAG
SQIGKINVTEMSTYVAVERSIAREAVRKLSAGKVKGKKVKVRLMDDA
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtcccatcacggccggcgcgccgttcaaccaactgccgctgccggccgccgcg
ctcgcgaatctcacgcagctcggctacgtcgagatgacgcccattcaggccgcgagtctg
cccattgcgctcgccggccacgatctgatcgcgcaggcaaaaacgggcagcggcaagacc
gcggcgttttcgctcgcgctcctcgcgcgtcttgacgcgcgcaagttcgccgtgcaggcc
atggtgctgtgcccgacgcgcgagcttgccgatcaggtcacgcaggaaattcgccgtctc
gcgcgcgcggaagaaaacatcaaggtgctgaccttgtgcggcggcacgccgatgcggccg
caaaccgccagtctcgaacatggcgcgcatatcgtggtcggcacgccgggccgcatcatg
gatcacctggagcgcggcagcctgccgctgcaatcgctcaatacgctcgtgctcgacgaa
gcggaccgcatgctcgacatgggtttcttcgacgacatcgccaccgtcgtcaggcaatgc
ccgaaggagcggcaaacgctgcttttctcggcgacgtatccggagggcattgtcaagctc
agccagcaattcctccggaatccgaaggaagtgaagttggccgagcgtcatgacgatacg
aagatccgccagcgcttctatgaagtgagcgaagacgagcgtctgcatgccgtcgggctg
ctgctcaatcactatcgcccggtgagcacgctcgcgttttgcaacacgaagcagcaatgc
cgcgatctgctcgacgtgctgcgcgcgcaggggtttcatgcgctcgcgctgcacggcgaa
ctcgaccagcgcgagcgcgatcaggtgctgatccagttcgcgaatcgcagttgctcggtg
ctggtcgcgacagacgtcgccgcgcgcggcctcgacattgcgcaactggaggcggtgatc
aacgtcgacgtcacgcccgatcctgaagtgcacgtgcaccggatcggccgcacgggccgc
gccgatcaggaaggctgggcattgagcctcgcgagcatggacgaaatgggccgtgtgggc
ggtatcgagcaggcgcaaaagcgcgaggtcgagtggcacaagctgtccgaactcacgtca
acgagcaatgagccgcttttgccgcccatggaaacgctgcagattctcggcggccgcaag
gaaaaaatccgtcccggcgacgtactcggcgcactcacgggcgaggccggttttgccggt
tcgcaaatcggcaagatcaacgtgacggagatgtcgacctatgtggcggttgaacgcagc
attgcccgcgaagcagtccgaaagctgagcgcgggcaaggtgaagggcaagaaagtgaag
gtgcggttgatggacgacgcgtga
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