Stenotrophomonas maltophilia JV3: BurJV3_3708
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Entry
BurJV3_3708 CDS
T01596
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
buj
Stenotrophomonas maltophilia JV3
Pathway
buj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BurJV3_3708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buj03019
]
BurJV3_3708
Enzymes [BR:
buj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BurJV3_3708
Messenger RNA biogenesis [BR:
buj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BurJV3_3708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEM53021
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All DBs
Position
complement(4098735..4100456)
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AA seq
573 aa
AA seq
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MSDKPLTDLTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVVNRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERTIRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPA
DDEKIPLLLGLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMGLPDIEAYIEQKIPSEPVTKELLTPLPRPERPAPAAGEEGEENESVGQIFREA
REARAAEEERRGGGRSGGRSGGGRGERRDGERSGERRSRGPRKPRVEGEQAAVAPAEGAE
AAVAQAPRPPRPPRAEGAPEGAVDGERKPRKRRRRRHGRPVEGGEGVQANAGNGASPVTP
VQVVAKPVRTAADTGDSFLTRIGRKIRRMLSGS
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgaccttctcctccttcgagctgcatccggccctg
caggccggccttgaaggagccggattcacccgctgcaccccgatccaggcgctgaccctg
ccggtcgcgctgcccggtggtgatgttgccggccaggcccagaccggcaccggcaagacc
ctggccttcctggtcgctgtcgtgaaccgcctgctgacccgcccggccctggccgaccgc
aagccggaagatccgcgcgcgctgatccttgccccgacccgcgaactggccatccagatc
cacaaggatgcggtgaagttcggttccgacctgggcctgcgtttcgcgctggtctacggc
ggcgtggattacgacaagcagcgcgagctgctgcagcagggcgtggacgtgatcatcgcc
accccgggccgcctgatcgactacgtcaagcagcacaaggtggtttcgctgcacgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgatctgggcttcatcaaggacatc
cgcttcctgctgcgccgcatgccggaacgcaccatccgccagaccctgctgttcagcgcc
accctcagccatcgcgtgctggagctggcctacgagcacatgaacgagccgcagaagctg
gtggtcgaagccgagaccatcaccgctgcccgcgtgcgccagcgcatctacttcccggcc
gacgacgagaagatcccgctgctgctgggcctgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaataccaaggtgttcgtcgagcgcgtcgcccgttcgctggaaaaggcc
ggctaccgcgtcggcgtgctgtccggcgacgtgccgcagaagaagcgcgagagcctgctc
aaccgcttccagaagggccagctggagatcctggtggccaccgacgtcgccgcgcgcggc
ctgcatatcgacggcatcaagtacgtctacaactacgacctgccgttcgacgccgaagac
tacgtgcaccgcatcggtcgtaccgcgcgcctgggcgaagagggtgatgcgatcagcttc
gcctgcgaacgctacgccatgggcctgccggacatcgaggcctacatcgagcagaagatc
ccgtccgagccggtcaccaaggaactgctgaccccgctgccgcgcccggaacgcccggcc
ccagccgctggcgaggaaggtgaggagaacgagagcgtcggccagatcttccgtgaagcg
cgcgaagcacgtgccgccgaagaagagcgtcgtggtggtggtcgcagtggtggccgctcc
ggcggtggccgtggcgagcgtcgcgacggtgagcgcagcggcgagcgccgttcgcgtggc
ccgcgcaagccgcgcgtggaaggcgagcaggccgcagttgccccggccgaaggtgccgaa
gccgctgtcgcccaggccccgcgtccgccgcgcccgccgcgtgccgagggtgcaccggaa
ggtgccgtggatggcgagcgcaagccgcgcaagcgccgtcgtcgtcgccacggccgtccg
gtcgagggtggcgagggcgtgcaggccaacgccggcaacggcgccagcccggtgactccg
gtgcaggtggtggccaagccggtgcgcacggcggccgataccggcgattcgttcctgacc
cgcatcggccgcaagatccgccggatgctgtcgggcagctga
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