Paraburkholderia phytofirmans OLGA172: AYM40_17295
Help
Entry
AYM40_17295 CDS
T05111
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYM40_17295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buz03019
]
AYM40_17295
Enzymes [BR:
buz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYM40_17295
Messenger RNA biogenesis [BR:
buz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYM40_17295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
P-loop_SecA
DegT_DnrJ_EryC1
AAA_22
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANB73922
UniProt:
A0A160FN16
LinkDB
All DBs
Position
1:3944114..3945691
Genome browser
AA seq
525 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLNTMPAVTTASGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ
IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP
PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAELVAQKIHPVDRDKKRELLTH
LIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDATLQV
LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGASGEAISLVCVDELQLLK
DIEKLIKRQVPQEVIAGFEPDPTAKPEPILRRGQGGGGGGNRQPRQSQGAPKREGGQRDG
GRRDGASSAKPAQRSGQRPANGQQQPKPQGAKPAGNGGQPRRDGQRHDGQPRAAAHEGSA
AQHAPRKPQGAKPQGGNPGALLGGAKTRNDAPRGGQPTRSGQRGR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaaccgttggtccgcgccgtacacgaactcggc
tacaccaccccgactccgatccagacgcaagcgatccccgccgtgctcaacggcggcgac
ctgctggccggcgcgcagactggcaccggcaagaccgccggcttcacgctaccgatcctg
cagcgtctgaacaccatgcccgctgtcaccacggcgtcgggcaagcgcgtcgtgcgcgcg
ctgatcctcacgccgacgcgcgagctggccgcccaggtcgaagaaagcgtgcgcgcctac
ggcaagtatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaatccgcag
atcggcgcgctgcgcagcggcgtggacatcgtcgtcgcaacgccgggccgtttgctcgac
cacatgcagcagaagaccatcgacctgtcgcatctcgagattctcgtgctggacgaagcc
gaccgcatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagttgccg
ccgaagcgtcagaacctgctgttctcggccaccttctccgacgagatcaagacgctcgcc
gacaacctgctcgactcgccggcgctgatcgaagtcgcccgccgcaacacgacggctgaa
ctggtcgcgcaaaagattcacccggttgaccgcgataagaagcgtgagctgctcacgcac
ctcatcaagcaacacaactggttccaggtactggtgttcacgcgcacgaagcacggcgcg
aaccgccttgccgaacagctgacgaaagacggcatcagcgcactggcgattcacggcaac
aagagccagtcggcccgtacccgtgcgctcgccgagttcaaggacgccacgctgcaagtg
ctggtcgcgaccgacatcgccgcacgcggcatcgatatcgatcagctgccgcacgtggtc
aactacgatttgccgaacgtgccggaagattacgtgcaccgcatcggccgcaccggtcgt
gcaggcgcatcgggcgaagcgatttcgctggtgtgcgtcgacgaactgcaactgctgaag
gacatcgagaagctgatcaagcgtcaggtgccgcaggaagtgatcgccggtttcgagccg
gatccgactgcgaagccggaaccgattctgcgccgtggccagggtggtggcggcggtggc
aatcgtcagccgcgccaaagccagggtgcgccgaagcgcgagggtggccagcgtgacggc
ggccgccgcgatggggcgtcgtctgcaaagccggcgcagcgttcgggtcagcgtccggcg
aatggtcagcagcagccgaagccgcaaggtgcaaaaccggccggcaacggcggccagccg
cgccgcgacggccagcgtcatgacggtcagccgcgtgcagcggcgcacgaaggcagcgcc
gcgcagcatgcgccgcgcaagccgcagggtgcaaagccgcaaggcggcaatccgggggcc
ttgctgggcggcgcgaagacgcgcaacgacgcgccgcgtggcggccagccgacgcgcagc
ggccagcgcggccgttaa
DBGET
integrated database retrieval system
