Paraburkholderia phytofirmans OLGA172: AYM40_17785
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Entry
AYM40_17785 CDS
T05111
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
buz03016
]
AYM40_17785
Enzymes [BR:
buz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AYM40_17785
Transfer RNA biogenesis [BR:
buz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AYM40_17785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
MetJ
Motif
Other DBs
NCBI-ProteinID:
ANB74012
UniProt:
A0A160FN98
LinkDB
All DBs
Position
1:complement(4050968..4053076)
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AA seq
702 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPTAGELMQQADAA
AQDIDLDFLWECAPDDEFPFATLGAEYFGETFGAIERAALVLRMHGAPVYFRRKGRGMYQ
RAPQEQLKMALAGLERKRQQALVQAGYEDELKAGRLPEGFSGSKALALLTKPDKNTIEYK
ALEGAAAARGISQARLMLECGGIPSARALHEAKFLSEFFPHGTGFPPVTVGALPEDLPEA
DVEAFSIDDITTTEIDDAFSVEHLADGRVRIGVHIAAPALGIARGDDVDAIARTRLSTVY
MPGDKITMLPDSVVEAFTLAEGGLRPALSLYVIINRETQEIVASETRAERVFVKNNLRHN
TLDELVTEEALAAGTGDYPHKEDIAVLWPFAQALFEKRQTARAGYGLRREVQRNTDFNFY
VEGEHITITPRRRGSPLDTIVAELAILANSSWGAFLHDHGVPGIYRSQRAFGAPTGPKRT
RMQTNAAPHEGLGVTQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLF
AVVQGFDDTYTAYADHQRRMEYFWCLRWLKQENRKQVVASVVKGDLVRLEEIPLLLHVPG
LGVHARGTRLQMEVMSIDELTVEASVRLLHVLDAPAVASGGEPEEADEGEEEIIDVADES
AEGEAEAQAEADLDGGAAEPGDAENGAGDAAPDQQHVAEPGR
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggcagtttcaaggcgggcagcgtgctgtcgcgccag
ggcgatgcttttcaggtcgagttgccgggcggccggcgcgccaaggtgcgcgcgaaagat
gtactgatcgaattcgaaaagccgaccgccggcgagttgatgcagcaggccgacgccgcc
gcgcaggacatcgatctggacttcctgtgggaatgcgcgccggatgacgagttcccgttt
gccacgctgggcgccgagtacttcggcgaaacattcggcgccatcgagcgggcggcgctg
gtgctgcgcatgcacggcgcgccggtgtacttccgccgcaagggccgcggcatgtaccag
cgcgcgccgcaggagcaactcaagatggcgctcgccgggctggagcgcaagcgtcagcag
gcgctggtgcaggccggttacgaagatgagctgaaggcaggccgtctgccggaaggcttc
agcggcagcaaggcactggctttgctgaccaagccggacaagaacacgatcgaatacaag
gcgctcgaaggcgcggcagcggcgcgcggcatttcgcaggcgcggctgatgctcgaatgc
ggcggtattccgtcggcccgcgcgttgcacgaagcgaaattcctttccgagtttttcccg
cacggcactggttttccaccggtgacggtcggcgcgttgccggaagatctgccggaagcc
gatgtcgaggcgttctcgatcgacgacatcaccaccactgagatcgacgatgcgttctcc
gtcgagcatctggccgatggccgcgtgcggatcggcgtgcacatcgccgcgccggcactc
ggcattgcgcgtggcgacgatgtcgatgcgatcgcgcgcacgcggttgtcgaccgtctat
atgccgggcgacaagatcacgatgctgcccgatagcgtcgtcgaagcgtttacgctggct
gaaggcggcttgcggccggcattgtcgctgtacgtgatcatcaatcgcgaaacgcaggaa
atcgtggcgagcgaaacgcgcgccgagcgcgtgttcgtgaagaacaatttgcgccacaac
acgttggacgaactggtcaccgaagaggcgcttgccgccggcacgggcgactatccgcac
aaggaagacatcgccgtgctgtggccgttcgcgcaggcgctgtttgaaaagcgtcagacc
gcgcgcgccggttacggcctgcggcgcgaagtgcagcgcaacaccgatttcaatttctat
gtcgagggcgagcacatcacgatcacgccgcgtcggcgcgggtcgccgctcgacacgatc
gtcgcggagctcgcgattctcgccaactcgtcatggggcgcgttcctgcacgaccatggc
gtgccgggcatctatcgttcgcaacgcgcgttcggcgcgccgaccggcccgaagcgcacc
cgcatgcagaccaacgccgcgccgcatgaaggcttgggcgtcacgcaatacgcgtggagc
acatcgccgctgcgccgctatgtcgacctggtgaatcagtggcagttgctcgcttgcgtc
cagcatggcgtgaccgcgaaactggctgcgccgttcaagccgaaggacgccgatctgttc
gccgtcgtgcaaggtttcgacgacacctacaccgcgtatgccgatcaccagcgccgcatg
gagtacttctggtgtctgcgctggctgaagcaggagaacaggaagcaggtggtggcgtcg
gtggtgaagggcgatctcgtgcgtctcgaagagattccgctgctgttgcacgtgccgggt
ctcggcgtgcacgcacgtggcacccgcttgcaaatggaagtgatgtcgatcgacgaactg
accgtcgaagcgtccgtgcgcctgttgcacgtgctcgacgcaccggccgtggcgagcggc
ggcgagcctgaagaagccgacgagggcgaagaggaaatcatcgacgtggcggatgaaagc
gccgaaggcgaagccgaggcccaggcggaagccgatctcgacggcggcgcggctgaaccg
ggcgacgcagaaaatggcgccggcgacgcggcacccgatcagcagcatgtcgcggagcca
ggacgatga
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