Burkholderia vietnamiensis LMG 10929: AK36_5227
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Entry
AK36_5227 CDS
T03893
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bve
Burkholderia vietnamiensis LMG 10929
Pathway
bve03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AK36_5227 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bve03400
]
AK36_5227 (ligD)
Enzymes [BR:
bve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AK36_5227 (ligD)
DNA repair and recombination proteins [BR:
bve03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AK36_5227 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJY08139
LinkDB
All DBs
Position
III:268193..271180
Genome browser
AA seq
995 aa
AA seq
DB search
MAGKLDPYRRKRHFDATPEPAGAGARRRAKPQPQPDGRAAPRRPLRFVIQEHHARRLHYD
FRLELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPVEYASFEGQIPAGHYGAGSVVVWDE
GTWTPDGGVAGARSGYRAGKLTFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERDEAAR
SADEFDVVGERPGSVHDGEGGASSATGGAGADSHDATARAGGGGKRATQTGKRAARSGER
AARAAERADDRDRATARAHVRDGDRAAARDGAAASDPGAARVRARTGAGDADRTPRRTRT
PDRASAGDRDPSTVEGAVRAPLPERIAPQLATLVDAPPADADWRYELKFDGYRILARIAG
KGARRHVKLMTREGRDWTAKLRAQRDALAALPVDDAWLDGEAVVLGANGLPDFQALQNAF
GAGQSDDVTLFVFDLPYLDGYDLRDAPLAARRALLEPLVADSDPTRLRFSPDLGDDVASL
IASACDTGLEGLIGKRAESRYRGGRSAAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLL
GVHDAPPAGKRSRAAAPLRYVGRVGTGFDARALDRLAALLRRHERDTTPFEPAPRERTRT
RAHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPATQIVREMPKHMETEGAMERQQS
TPDAGHERKRASRAADDTGKRKPNARASASARNAREDGDAELSGRVRITHPERVLDPTSG
TRKIDLARYWQWVAPWLLPDLKGRPVSLVRAPGDITGELFFQKHAERREIPFVTQHPGLD
PGHGALLSLDSVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWSAMIEA
AQLVRGLLDELGLRSFCKTSGGKGLHVVVPITRHMGWDDVKAFSRALAQHVAGALPERFT
ATMGPRHRRGKIFIDYLRNGRGASTIAAYSVRARPGLGVSVPLHWDEVPDTTGGAQWTID
TLHERLERLKRDPWEGYDDTRQRITAQMRARLDGA
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcaagctcgatccgtatcgccgcaaacgccatttcgacgcgacgcccgaaccc
gccggcgcgggcgcgcggcggcgcgcgaagccgcagccgcagcccgatgggcgtgcggcc
ccgcgccggccgttgcgcttcgtgatccaggaacatcatgcgcggcggctgcactacgac
ttccggctcgaactcgacggcacgctgaagtcatgggcggtgccgaaggggccgagcttc
gatccgtcggtgaagcgtctggccgtgcacgtcgaggatcatccggtcgaatacgcgtcg
ttcgaagggcagattccggccggccactacggcgccgggtcggtcgtcgtgtgggacgaa
ggcacgtggacgcccgacggcggcgtcgcgggcgcgcgcagcggctatcgcgcgggcaag
ctgacgttccggctcgatggcgagaagctgcacggcggctgggcgctggtgcgcagcggg
cggcaggagggacgccaggagcagtggctgctgatcaaggagcgcgacgaagcggcgcgc
agcgccgatgaattcgacgtggtcggcgagcggccgggcagcgtgcacgacggtgagggc
ggggcgtcgtcggcgacaggcggcgcgggcgcggactcgcacgatgcgacggcgcgcgcg
gggggcggcggcaagcgcgccacgcagaccggcaagcgcgccgcgcgaagcggcgagcgc
gcggcacgagccgccgagcgcgccgatgaccgcgatcgcgccaccgcccgcgcgcacgtt
cgcgatggcgaccgcgccgcggcccgcgacggtgctgccgcaagcgaccccggcgccgcc
cgcgtccgagctcgcaccggcgccggcgacgccgaccgcacccctcgccgtacgcgtact
cccgaccgcgcatccgccggcgaccgcgatccctccaccgtcgaaggcgcggtgcgcgcg
ccgctgcccgagcgcatcgcgccgcaactggcgacgctggtcgacgcgccgcccgccgac
gcagactggcgctacgagctgaaattcgacggctaccggatcctcgcgcgcatcgccggc
aagggcgcgcgtcgccacgtgaagctgatgacgcgcgaaggccgcgactggaccgcgaag
ctgcgcgcgcagcgcgatgcgctcgcggcgctgcccgtcgacgacgcgtggctcgacggc
gaggccgtcgtgctcggcgcgaacggcctgcccgacttccaggcgttgcagaacgcgttc
ggcgccgggcagtcggacgacgtcacgctgttcgtcttcgacctgccgtatctcgacggt
tacgacctgcgcgatgcgccgctggccgcgcgccgcgcgctgctcgagccgctcgtcgcc
gacagcgacccgacccggctgcgcttttcccccgatctcggcgacgacgtcgcatcgctg
atcgcgagcgcctgcgacaccggcctcgaagggctgatcggcaagcgggcggaatcgcgc
tatcgcggcggacggtcggcggcctggatcaagctcaaatgccggcgccggcaggaattc
gtgatcggcggctacaccgagccgtcgggcagccgccacggcttcggcgcgctgctgctc
ggcgtgcacgacgcgccgccggccggcaagcgctcgcgcgcggccgcgccgctgcgctac
gtcggccgcgtcggcaccggcttcgacgcgcgcgcgctcgaccggctcgccgcgctgctg
cgccggcacgagcgcgacacgacgccgttcgagccggcgccgcgcgaacgcacgcgcacg
cgcgcgcactgggttgagccgacgctcgtcgccgaatgcgaattcgcggaatggaccggc
gacggcatcgtgcggcaggccgcgttcatcgcgttgcgcgacgacaagccggcgacgcag
atcgtccgagaaatgccgaagcatatggaaacggagggagcgatggagcgacagcagagc
acgcccgacgcgggccatgaacgcaagcgcgcgtcgcgcgccgccgacgatacgggcaag
cgcaagccaaacgcgcgcgcgagcgcgtccgcgcgcaacgcacgtgaggacggcgacgcg
gagctgtccggccgcgtgcgcatcacgcatcccgagcgcgtgctggacccgacgagcggc
acgcgcaagatcgatctcgcacgctactggcaatgggtggcgccgtggctgctgcccgac
ctgaaagggcggcccgtgtcgctcgtgcgcgcaccgggcgacatcaccggcgagctgttc
ttccagaagcacgccgagcgccgcgagattccgttcgtcacgcagcaccccgggctcgat
cccgggcatggggcgctgctgtcgctcgacagcgtcgatgcgctgctcggcgcggcccag
atgggcacgatcgaattgcatacgtggaacgcgcatgcatcgaacatcgagcggcccgat
cgcatcgtgttcgacctcgatcccgatccggcgctgccgtggagcgcgatgatcgaggcc
gcgcagctggtgcgcgggctgctcgacgagctcggcctgcgctcgttctgcaagacgagc
ggcggcaaggggctgcacgtcgtcgtgccgatcacgcggcacatgggctgggacgacgtg
aaggcgttctcgcgcgcgctcgcgcagcacgtcgcgggcgcgctgcccgagcgcttcacc
gcgacgatggggccgcggcaccggcgcggcaagatcttcatcgactacctgcgcaacggt
cgcggcgcgagcacgatcgccgcctactcggtgcgcgcacggccggggctgggcgtatcg
gtgccgctgcactgggacgaggtgcccgacacgacgggcggcgcgcagtggaccatcgac
acgctgcacgagcgcctcgagcgcttgaagcgcgacccgtgggaaggctacgacgacacg
cgccagcgcattaccgcgcagatgcgcgcgcggctcgacggggcgtga
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integrated database retrieval system
