Bosea vestrisii: QO058_16090
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Entry
QO058_16090 CDS
T09164
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bves
Bosea vestrisii
Pathway
bves03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bves00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QO058_16090 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bves03400
]
QO058_16090 (ligD)
Enzymes [BR:
bves01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QO058_16090 (ligD)
DNA repair and recombination proteins [BR:
bves03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QO058_16090 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WID94377
LinkDB
All DBs
Position
3241829..3244360
Genome browser
AA seq
843 aa
AA seq
DB search
MANLDLYRSKRDFSRTREPKGAAGRRKATQAGGAFVIHKHAARRLHYDLRLEHRGALWSW
AVTRGPSLDPEEKRLAVHVEDHPLEYGSFEGTIPEGEYGAGSVIVWDEGKWIPEGDPVRG
MEKGHLAFALEGHKLAGRWHLVRLKARRGEKRDNWLLIKVDDDFARDDEDILETAPNSVT
SGKSVEEVGEDPKGDVWSTDEKPAKGRKPKSAKSKTTKTKLAGRSAKAESEPLPRFVAPC
LATLQDKPPAGDAWLHEVKFDGYRLQARISAGKVKLLTRTGLDWTERFGKGIGDAFAALA
CEAALIDGEVVALGENGISSFSALQAALSDGETANLVFFAFDLLHLDGEDLKGEPLLARK
ERLQELLQAAGPESPLRYSEHFVEPGQTMLRHACRMGLEGVISKRAEAPYRSGRGRDWIK
SKCTQRQEFVIAGYVPSKASRNQLGSLVLGYHEDDELKPAGRVGTGFTRNSAAALKKKLD
AIAAEASPFSGKAGRERGIVWVKPEFVAEIAFGSWTASKTLRHSAFLGLREDKPAQEVVE
ERSLKAGASKAQRTTKTRRKASPETTVTLSNPAKPLWPDIGFTKQDLLDYYASVWERMAP
FVVERPLSLLRAPDGVGGQVFFQKHAGAGLHKAVSRVKDKDGEELLFIRDFDGLAALVQL
GTVEVHVWGATIDAVETPDQIIFDLDPDQGVPLERVREAALSVRQRLDELGFESFLKTSG
GKGFHVVMPLKPKAGWDEVKGFARDFAKAMEQAEPKLYTATLSKKARKGRIFIDYLRNGR
GSTAIAPFSTRARPGAAVAMPVAWELLEKGLAPDAYKAPEVMKKGPPDDAWAAFFKPKRS
LKR
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctcgacctctatcgctcgaagcgcgatttctcccgcacccgcgagccgaaa
ggtgctgccggccgccggaaggcaactcaggccggcggtgccttcgtgatccacaagcac
gccgcgcgccgcctccattacgatctcaggctcgaacatcgcggtgcgctctggtcctgg
gctgtgacgcgggggccgagcctcgatccggaagagaagcgcctcgctgtccatgtcgag
gaccatccgctcgaatacggctcgttcgaagggacaattccggaaggcgagtacggcgct
ggctcggtcatcgtctgggacgagggcaaatggatcccggaaggcgatcccgtccgcggc
atggagaagggccaccttgccttcgcgctcgaaggacacaagctggccggacgctggcat
ctggtgcgcttgaaggcccggcgtggcgagaagcgcgacaactggctgctgatcaaggtc
gacgacgatttcgcccgtgacgacgaggacatcctggagaccgcgccgaattcggtgaca
tccggcaagagtgtcgaggaggtgggcgaggatcccaaaggggacgtctggtcgaccgat
gagaagcccgcgaagggccgcaagcccaagagtgccaagtccaagacaacaaaaaccaag
ctcgccggacgctcggcaaaagccgagagcgagccgctgccgcgtttcgtcgcgccgtgc
ctcgcgacgttgcaggacaagcccccagccggcgatgcctggctgcacgaggtcaagttc
gatggctaccgactgcaggcgcgaatctccgctggaaaggtcaagctgctcacgcggacc
gggctcgactggaccgagcgcttcggcaaagggatcggcgatgctttcgccgcgcttgcc
tgcgaggctgcactgatcgacggcgaggtcgtggcgctgggagaaaacggcatttcctcc
ttctccgccctgcaggccgccctgtcggatggcgagaccgcgaacctcgtcttcttcgcc
ttcgacctgctgcatctcgacggcgaggacctgaagggagaaccgcttctcgcgcgcaag
gagcgattacaggagctgctgcaggctgccgggccagagtcgccgctgcgttattccgag
catttcgtcgagccgggccagaccatgctgcgtcatgcctgccgcatggggctggagggc
gtgatttccaagcgtgccgaggcgccctatcgcagcgggcggggtcgcgactggatcaag
tcgaaatgcacgcagcgccaggagttcgtcattgccggctatgtgccgtcgaaggcgtcg
cgcaaccagctcggttcgctcgtgctcggttatcacgaggatgatgagctgaagcccgcc
ggccgtgtcggcaccggcttcacccgcaattcggccgcggcgctgaagaaaaagctcgat
gccattgccgcggaagcttcgcccttttcgggcaaagccggccgcgagcgtggtatcgtc
tgggtgaagcccgagttcgtcgccgagatcgccttcggctcctggacggcctcgaaaacc
ctgcggcattcggccttcctcggcctgcgcgaagacaagccggcgcaggaggtcgtcgag
gagagatcgctcaaggctggagcgagcaaggctcaacgcacgacgaagaccaggcgtaag
gccagcccggagacgaccgtgacgctcagcaatcccgccaagccgctctggcccgatatc
ggcttcaccaagcaggatctgctcgattactacgccagcgtctgggagcgcatggcgccg
tttgtggtcgagcgcccactgagcctgctgcgtgcgcccgacggcgtcggcggccaggtc
ttcttccagaaacatgcgggcgccggcctgcacaaggcggtttcgcgggtgaaggacaag
gatggcgaggagctgctcttcatccgcgatttcgacggtcttgccgcgctcgtccagctc
ggcacggtcgaggttcatgtctggggcgccacgatcgacgcggtcgagacgcctgaccag
atcatcttcgatctcgaccccgaccagggcgtgccgctggagcgggtgcgcgaggcggcg
ctgagcgtgcgccagcgcctggatgagcttggcttcgagagctttctcaagacctccggc
ggcaagggctttcacgtcgtgatgccgctgaagcccaaggcgggctgggacgaggtcaag
ggcttcgcccgcgatttcgccaaggcgatggagcaggccgaacccaagctctacaccgcg
accttgtcaaagaaggcgcgcaagggccgcatcttcatcgattatctccgcaacggccgc
ggctcgaccgcgatcgcgccgttctcgacaagagcccgccccggagccgccgtcgccatg
ccggtcgcctgggaactgctggagaaggggctggcgcccgatgcctacaaggcgccggag
gtgatgaagaagggcccgcccgacgacgcctgggccgcattcttcaagccgaagcggtcg
ttgaagcgctga
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