Burkholderia vietnamiensis G4: Bcep1808_5735
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Entry
Bcep1808_5735 CDS
T00493
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvi
Burkholderia vietnamiensis G4
Pathway
bvi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bcep1808_5735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvi03400
]
Bcep1808_5735
Enzymes [BR:
bvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bcep1808_5735
DNA repair and recombination proteins [BR:
bvi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bcep1808_5735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABO58672
UniProt:
A4JQW9
LinkDB
All DBs
Position
3:320282..323263
Genome browser
AA seq
993 aa
AA seq
DB search
MAGKLDPYRRKRHFDATPEPAGARRRAKPQPQPDGRAAPRRPLRFVIQEHHARRLHYDFR
LELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPVEYASFEGQIPAGHYGAGSVVVWDEGT
WTPDGGVAGARSGYRAGKLTFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERDEAARSA
DEFDVVGERPGSVHAGEGGPSSAAGGAGADSHDATARTGGGGKHATQTGKRAARSGERAA
RAAERADDRDRATARAHVRDGDRAAARDRAAASDPGAARVRTRTGDGDADRTPRRTRTPD
HASASDRDPSTVEGAVRAPLPERIAPQLATLVDAPPADADWRYELKFDGYRILARIAGKG
ARRHVKLMTREGRDWTAKLRAQRDALAALPVDDAWLDGEAVVLGANGLPDFQALQNAFGA
GQSDDVTLFVFDLPYLDGYDLRDAPLAARRALLEPLVADSDPTRLRFSPDLGDDVASLIA
SACDTGLEGLIGKRAESRYRGGRSAAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLLGV
HDAPPAGKRARAAAPLRYVGRVGTGFDARALDRLAALLRRHERDTTPFEPAPRERTRTRV
HWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPATQIVREMPKHVETEGAMERQQSTP
DAGHERKRASRAADDTGKRKPNARASASARNAREDGDAELSGRVRITHPERVLDPASGTR
KIDLARYWQWVAPWLLPDLKGRPVSLVRAPGDITGELFFQKHAERREIPFVTQHPGLDPG
HGALLSLDSVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWSAMIEAAQ
LVRGLLDELGLRSFCKTSGGKGLHVVVPITRHMGWDDVKAFSRALAQHVAGALPERFTAT
MGPRHRRGKIFIDYLRNGRGASTIAAYSVRARPGLGVSVPLHWDEVPDTTGGAQWTIDTL
HERLERLKRDPWEGYDDTRQRITAQMRARLDGA
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcaagctcgatccgtatcgccgcaaacgccatttcgacgcgacgcccgaaccc
gcgggtgcgcggcggcgcgcgaagccgcagccgcagcccgatgggcgcgcggccccgcgc
cggccgttgcgtttcgtgatccaggaacatcatgcgcggcggctgcactacgacttccgg
ctcgaactcgacggcacgctgaaatcctgggcggtgccgaaggggccgagcttcgatccg
tcggtgaagcgtctggccgtgcacgtcgaggatcatccggtcgaatacgcgtcgttcgaa
gggcagattccggccggccactacggcgcagggtcggtcgtcgtgtgggacgaaggcacg
tggacgcccgacggcggcgtcgcaggcgcgcgcagcggctatcgcgcgggcaagctgacg
ttccggctcgatggcgagaagctgcacggcggctgggcgctggtgcgcagcggacggcag
gagggacgccaggagcagtggctgctgatcaaggagcgcgacgaagcggcgcgcagcgcc
gatgaattcgacgtggtcggcgagcggccgggcagcgtgcacgccggtgagggcgggcca
tcgtcggcggcaggcggcgcgggcgcggactcgcacgatgcgacggcgcgcacgggtggc
ggcggcaagcacgccacgcaaactggcaagcgcgccgcgcgaagcggcgagcgcgcggca
cgagcggccgagcgcgccgatgaccgcgatcgcgccaccgcccgcgcgcacgttcgcgat
ggcgaccgcgccgcggcccgcgaccgtgctgccgcaagcgaccctggcgccgcccgcgtc
cgaactcgcaccggcgacggcgacgccgaccgcacccctcgccgtacgcgtactcccgac
cacgcatcggccagtgaccgcgatccctccaccgtcgaaggcgccgtgcgcgcgccgctg
cccgagcgcatcgcgccgcaactggcgacgctggtcgacgcgccgcccgccgacgccgac
tggcgctacgagctgaaattcgacggctaccggatcctcgcgcgcatcgccggcaagggc
gcgcgtcgccacgtgaagctgatgacgcgcgaaggccgcgactggaccgcgaagctgcgc
gcgcagcgcgatgcgctcgcggcgctgcccgtcgacgacgcgtggctcgacggcgaggcc
gtcgtgctcggcgcgaacggcctgcccgacttccaggcgttgcagaacgcgttcggcgcc
gggcagtcggacgacgtcacgctgttcgtcttcgacctgccgtatctcgacggttacgac
ctgcgcgatgcgccgctggccgcgcgccgcgcgctgctcgagccgctcgtcgccgacagc
gacccgacccggctgcgcttttcgcccgatctcggcgacgacgtcgcgtcgctgatcgcg
agcgcctgcgacaccggcctcgaagggctgatcggcaagcgggcggaatcgcgctatcgc
ggcggacgctcggcggcatggatcaagctcaaatgccggcgccggcaggaattcgtgatc
ggcggctacaccgagccgtcgggcagccgccacggcttcggcgcgctgctgctcggcgtg
cacgacgcgccgccggccggcaagcgcgcgcgcgcggccgcgccgctgcgctacgtcggc
cgcgtcggcaccggcttcgacgcgcgcgcgctcgaccggctcgccgcgctgctgcgccgg
cacgagcgcgacacgacgccgttcgagccggcgccgcgcgaacgcacgcgcacgcgcgtg
cactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatggaccggcgacggc
atcgtgcggcaggccgcgttcatcgcgttgcgcgacgacaagccggcgacgcagatcgtc
cgcgaaatgccgaagcatgtggaaacggagggagcgatggagcgacagcagagcacgccc
gacgcgggccatgaacgcaagcgcgcgtcgcgcgccgccgacgatacgggcaagcgcaag
ccaaacgcgcgcgcgagcgcgtccgcgcgcaacgcacgtgaggacggcgacgcggagctg
tccggccgcgtgcgcatcacgcatcccgagcgcgtgctggacccggcgagcggcacgcgc
aagatcgacctcgcgcgctactggcaatgggtggcgccgtggctgctgcccgacctgaaa
gggcggcccgtgtcgctcgtgcgcgcaccgggcgacatcaccggcgagctgttcttccag
aagcacgccgagcgccgcgagattccgttcgtcacgcagcaccccgggctcgatcccggg
catggcgcgctgctgtcgctcgacagcgtcgatgcgctgctcggcgcggcccagatgggc
acgatcgaattgcatacgtggaacgcgcatgcatcgaacatcgagcggcccgatcgcatc
gtgttcgacctcgatcccgatccggcgctgccgtggagcgcgatgatcgaggccgcgcag
ctggtgcgcgggctgctcgacgagctcggcctgcgctcgttctgcaagacgagcggcggc
aaggggctgcacgtcgtcgtgccgatcacgcggcacatgggctgggacgacgtgaaggcg
ttctcgcgcgcgctcgcgcagcacgtcgcgggcgcgctgcccgagcgcttcaccgcgacg
atggggccgcggcaccggcgcggcaagatcttcatcgactacctgcgcaacggtcgcggc
gcgagcacgatcgccgcctactcggtgcgcgcacggccggggctgggcgtatcggtgccg
ctgcactgggacgaggtgcccgacacgacgggcggcgcgcagtggaccatcgacacgctg
cacgagcgcctcgagcgcttgaagcgcgacccgtgggaaggctacgacgacacgcgccag
cgcattaccgcgcagatgcgcgcgcggctcgacggggcgtga
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