Burkholderia sp. YI23: BYI23_A017710
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Entry
BYI23_A017710 CDS
T01711
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
byi
Burkholderia sp. YI23
Pathway
byi03410
Base excision repair
byi03430
Mismatch repair
byi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BYI23_A017710 (recJ)
03430 Mismatch repair
BYI23_A017710 (recJ)
03440 Homologous recombination
BYI23_A017710 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
byi03400
]
BYI23_A017710 (recJ)
DNA repair and recombination proteins [BR:
byi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BYI23_A017710 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BYI23_A017710 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BYI23_A017710 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AET89609
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All DBs
Position
1:1994034..1995737
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AA seq
567 aa
AA seq
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MTRIVTRAPSPADAEALMRHGLHPVIARLYAARGVTTPDEVETEFKRLHAPAALKGCDAA
AVVLAEALAAGKRMVVVADYDCDGATACAVAVRGLRMFGASVDYLVPNRFEYGYGLTPEI
VELAARSPRGAPDLLVTVDNGIASVEGVATANALGIDVLVTDHHLPGDELPAARAIVNPN
QPGCEFPSKCIAGVGVMFYVLLALRAELRRRGAYVDGTPEPRLDGLLDLVALGTVADVVK
LDCNNRILVAQGLKRIRSGRMQPGIAALFRAAGRDARTASGFDLGFALGPRLNAAGRLSD
MSLGIECLTTDDVGRAWELAQQLDGMNRERREIEAGMQQQALAELQTFDCGERATLTLYD
ASWHQGVIGIVAGRLKERFHRPSFTFAHADESGVLCKGSGRSIPGFHLRDAVDLISKREP
GLIHKFGGHAMAAGLTLATADIARFTQAFETVGREWLTAETLARTVETDGELEDAYFTPQ
FVEMLDAAVWGQGFPAPTFSGEFEVASQALVKDKHLKLSLLRGRQRFNAIWFNHVDPLPP
RATVAYRLVSDSWNGVARVQLIVEHAA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgaatcgtcacccgcgcgccctctcccgccgacgccgaagcgctgatgcgccac
ggtctgcatcccgtcatcgcgcgcctgtacgcggcgcgcggcgtgactacgcccgacgaa
gtcgaaaccgagttcaagcgcctgcatgcgcccgccgcgctgaaaggctgcgacgccgcc
gccgtcgtgctcgccgaggcgctcgccgcaggcaagcgcatggtcgtggtcgccgattac
gactgcgacggcgcgaccgcctgcgccgtcgccgtgcgcggcttgcgcatgttcggcgcg
agcgtcgattatctggtgccgaaccgcttcgaatacggctacggcctgacgccggaaatc
gtcgaactggctgcgcgttcgccgcgcggcgcgcccgatctgctcgtcacggtcgataac
ggcatcgcgagcgtcgagggcgtcgccacggcgaacgcgctcggcatcgacgtgctcgtc
accgatcaccaccttcccggcgacgaattgcccgccgcgcgcgcgatcgtcaatccgaac
cagccgggctgcgaatttccgagcaagtgcatcgcgggcgtgggcgtgatgttctatgtg
ctgctcgcgttgcgcgcggaattgcggcgccgcggcgcgtatgtcgacggcacgccggaa
ccgcgcctcgacggactgctcgatctcgtcgcgctcggcacggtcgccgacgtcgtcaag
ctcgattgcaacaaccgcattctcgtcgcgcaagggttgaagcgcattcgctccgggcgc
atgcagccgggcatcgcggcgctctttcgcgccgccggccgcgatgcgcgcacggcatcg
ggcttcgatctcggcttcgcgctcggtccgcgcctgaacgcggcgggacgtctgtcggac
atgtcgctcggcatcgaatgcctgaccaccgacgacgtcggccgcgcctgggaactcgcg
caacagctcgacggcatgaaccgcgaacgccgcgagatcgaggccggcatgcagcagcag
gcgctcgccgaactgcagactttcgattgcggcgagcgcgcgacgctcacgctgtacgac
gcgagctggcatcagggcgtgatcggcatcgtcgcggggcggctgaaggagcggtttcat
cggccgtcgttcactttcgcgcacgccgacgaaagcggcgtgctgtgcaagggctcgggc
cgctcgattcccggctttcatctgcgcgacgcggtcgatctcatcagcaagcgcgaaccc
ggcctcatccacaagttcggcggtcacgcgatggccgcgggcctgacgctcgccaccgcc
gacattgcgcgcttcacgcaggcgttcgagaccgtcggccgcgagtggctgacggcggaa
acgctcgcgcgcaccgtcgaaaccgacggcgaactcgaagacgcgtacttcacgccgcaa
ttcgtcgagatgctcgacgctgcggtgtggggccagggctttcccgcgcccacgttctcg
ggcgaattcgaagtcgcgtcacaggcgctcgtgaaggacaagcatctgaaactgtcgctc
ctgcgcggacgccagcgcttcaacgcgatctggttcaatcacgtcgatccgctgccgccg
cgcgcgacggtggcgtaccggctggtcagcgattcgtggaatggagtggcgcgggtgcag
ttgatcgtggagcacgcggcctaa
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