Burkholderia sp. YI23: BYI23_A024550
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Entry
BYI23_A024550 CDS
T01711
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
byi
Burkholderia sp. YI23
Pathway
byi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
byi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BYI23_A024550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
byi03021
]
BYI23_A024550
03400 DNA repair and recombination proteins [BR:
byi03400
]
BYI23_A024550
Enzymes [BR:
byi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BYI23_A024550
Transcription machinery [BR:
byi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BYI23_A024550
DNA repair and recombination proteins [BR:
byi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BYI23_A024550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
UbiD
Motif
Other DBs
NCBI-ProteinID:
AET90293
LinkDB
All DBs
Position
1:complement(2752709..2756815)
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFQTFLQADTSSSQRKAEGLQAAFSSV
FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGMTPEQILANFFVFDNFGLMSE
GAQMEFVPERLRGEVARFDIQDRDGNVIVTKDKRINAKHIRDLENAKTKFISVPEEYLLG
RVLAKNVIDPETGEVIANANEEITETVLEKLREAKVKDIQTLYTNDLDQGPYISSTLRID
ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
IGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGVVDYVDAGRIVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIAKVG
DKVARGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGITRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFSRLARMLNGKVANGGPKKLAKGTAIDLAYLEDLDHYHWFDIR
LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQILEVHLGWAA
KGLGWRIGEMLQRQTKIEELRMFLTQIYNESGRKEELDSFSDDEILELAKNLREGVPFAT
PVFDGATEEEMGRALDLAYPDDIATNLGMNPSKNQVQLHDGRTGEPFERKVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgtattcgcaagagtttcgcgaagcgccccatc
gttcaccaagttcccttcttgctggcgacccagcttgaatcattccagacgtttctgcaa
gcagacacgtcttcttcgcagcgcaaggcagaaggcttgcaggctgcgttcagctcagtt
ttcccgattgtctcgcacaacggcttcgcgcggctcgagttcgtcagctacatgctgtcg
ccgcccgcgttcaacatcaaggaatgtcagcagcgtggcctgacgtactgctcggcgctg
cgcgcgaaagtgcgcctggttctgctcgacaaggaatcgcccagcaagccggtcgtcaag
gaagtgaaggaacaggaagtctacatgggcgaaattccgctcatgacgccgacgggttcg
ttcgtcatcaacggcaccgagcgcgtgatcgtgtcgcagctgcaccgttcgcctggcgtg
ttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctgttctcggcgcgc
atcatcccttaccgtggttcgtggctcgatttcgagttcgatccgaaggacgtgctgtac
ttccgcgttgaccgtcgtcgcaagatgccggtcacgattctgctgaaagccatcggcatg
acgccggagcagatcctcgcgaacttcttcgtgttcgacaacttcggcctgatgagcgaa
ggcgcgcagatggaattcgttccggagcgtctgcgcggtgaagtcgcgcgcttcgacatt
caggatcgcgatggcaatgtcatcgtgacgaaggacaagcgcatcaacgcgaagcacatt
cgcgatctcgaaaacgccaagacgaagttcatctcggtgcccgaggaatatctgctcggc
cgcgtgctggcgaagaacgtgatcgatccggaaacgggcgaagtgatcgcgaacgccaac
gaggaaatcaccgaaacggttctcgaaaagctgcgcgaggcgaaggtcaaggacatccag
acgctgtacacgaacgatctggatcagggtccgtacatctcgtcgacgctgcgtatcgac
gaaactgccgacaagatggccgcgcgcatcgcgatctaccgcatgatgcgtccgggcgag
ccgccgaccgaagaagcggtcgaggccctgttcaaccgtctgttctacagcgaagacgcg
tacgacctgtcgaaggtcggccgtatgaagttcaaccgccgcgtgggtcgcgatgaaatc
atcggaccgatgacgctgcaggacgacgacatcctcgcgaccatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtggacgatatcgatcacctcggcaatcgtcgcgtgcgt
tgcgtcggcgaactcgcggagaatcagttccgcgctggtctcgtgcgtgtcgagcgcgcg
gtgaaggaacgcctcggccaggccgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgattcgcgagttcttcggttcgtcgcagctttcgcagttc
atggaccagaccaacccgctgtcggaaattacgcacaagcgtcgcgtgtccgcactgggc
ccgggcggtctgacgcgcgagcgcgcgggcttcgaagtccgcgacgtgcatccgacgcac
tacggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcg
ctggcgctgtatgcgcacctgaacgaatacggcttcctcgaaacgccgtaccgaaaggtc
gtggacagcaaggtgaccgaccagatcgactatctgtcggcaatcgaagaaggccgctat
gtgatcgcgcaggcgaacgcggcagtggccgaagacggcacgctgaccgacgaactcgta
tcgtcgcgtgaagcgggcgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcagatcgtctcggtggctgcatcgctgattccgttcctcgaacacgac
gacgcgaaccgcgcgttgatgggctcgaacatgcagcgtcaggccgtgccttgcctgcgt
ccggaaaagccggtcgtcggtacgggcatcgagcgcacggttgcggtcgactcgggcacg
acggttcaggcgctgcgtggcggcgtcgtcgattacgtcgacgcgggccgtatcgtgatt
cgcgtgaatgacgacgaagccgtggccggcgatgtcggcgtggacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgcgaaggtcggc
gataaggttgcgcgcggcgacgtgctggctgacggcgcatcgaccgatctgggcgaactc
gcgctcggccagaacatgctggtcgcgttcatgccgtggaacggctacaacttcgaagac
tcgatcctgatctcggagaaggtcgttgcggacgatcgctacacgtcgatccacatcgaa
gaactgaatgtcgttgcgcgcgacacgaagctcggaccggaagaaatcacgcgcgatatc
tcgaacctcgcggaagtgcagcttggccgtctggacgagtcgggcatcgtgtacatcggc
gcggaagtcgaagcgggcgacgtgctcgtcggtaaggtcacgccgaagggcgaaacccag
ctgacgccggaagaaaagctgctgcgcgcgatcttcggcgagaaggcatcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcacggtcatcgacgtgcaagtgttc
acgcgcgaaggcatcacgcgtgacaagcgcgcgcaacagatcatcgacgatgaactgaag
cgttatcgcctcgatttgaacgaccagttgcgtattgtggaaggcgacgcgttctcgcgt
ctcgcacgtatgctgaacggcaaggtcgcgaacggcggtccgaagaagctcgcgaagggc
acggcaatcgacctcgcgtacctcgaagatctcgaccactaccactggttcgacatccgc
ctcgcggacgaagaagcggcggcacagctggaagcgatcaaggattcgatcgagcagaag
cgtcaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtatctcgcggtcaagcgtcgtctgcag
cctggcgacaagatggcgggccgtcacggcaacaagggtgtcgtgtcgaagatcgtgccg
atcgaagacatgccgtacatggccgatggccgtccggccgacgtcgtgctgaatccgctc
ggcgtgccgtcgcggatgaacgtgggtcagattctcgaagtgcatctgggctgggccgcg
aagggtctgggctggcgcatcggcgaaatgctgcagcgtcagacgaagatcgaagaactg
cgcatgttcctgacgcagatctacaacgagtccggccgcaaggaagagctggacagcttc
tccgacgacgagatcctcgaactcgcgaagaatctgcgcgaaggcgtgccgttcgccacg
ccggtgttcgacggtgcgaccgaagaggaaatgggccgcgcgctggatctggcgtacccg
gacgatatcgccacgaacctcggcatgaacccgtcgaagaatcaggttcaactgcacgat
ggccgcacgggcgaaccgttcgagcgcaaggtcacggtcggctacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggcggccagcgcttcggtgagatggaa
gtgtgggcgctggaagcgtacggcgcatcgtatgtgctgcaagaaatgctgacggtcaag
tcggacgacgtcaccggccggacgaaggtgtatgagaacctcgtcaagggcgatcacgtc
atcgacgcgggcatgccggaatccttcaacgtgttggtgaaggaaatccgctcgctcggt
attgatatcgatctggaccgcaactaa
DBGET
integrated database retrieval system