Caballeronia sp. SBC2: SBC2_12210
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Entry
SBC2_12210 CDS
T06459
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
caba
Caballeronia sp. SBC2
Pathway
caba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBC2_12210 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caba03019
]
SBC2_12210 (rhlE_2)
Enzymes [BR:
caba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SBC2_12210 (rhlE_2)
Messenger RNA biogenesis [BR:
caba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SBC2_12210 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QIE23202
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All DBs
Position
1344111..1345700
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AA seq
529 aa
AA seq
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MSDSVATNPSAASSDAAPGADSSTEVQAISAAPALELGATESAVPGPVPTFDQFGLSPDI
LRAVVDSGYTIPTPIQAQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQRLLPMASTSAS
PARHPVRALILTPTRELADQVAANVQAYSKHTPLRSTVVFGGVDMNPQSEALRRGVEILI
ATPGRLLDHVQQKTLNLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATF
SGEIKKLAATYLRNPQTIEVARSNSTNANVRQIVFEVAESDKSGAVTQLIRERGLKQVLV
FCNSKIGASRLSRVLEKDGIVATAIHGDRTQGERMQALEAFKKGEIEALVATDVAARGLD
ITDLPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRPLEV
MVLKVDVPVRRESSSAPRREERSGRPERGEHRHARSEEPRRRSTSFERSHTRQQPIDDFF
LKPYEPSAASTRKTQDDAAAEAERKNTPRQPLAALLGGLGMPRRTPSGS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattccgtcgccacgaacccgtccgccgcttcatccgacgctgcacccggggct
gattccagcactgaagttcaagcgatttcagccgctcccgcgctcgagttgggagccact
gaatccgcggttcccggtccggtgcccacgttcgaccagttcggcctgtcgcccgacatc
ctgcgtgcggtggtcgattccggctacacgatccccacgccgatccaggcacaagctatc
cccgtggtgctggccggccgcgacatgatgggcgccgcgcaaacgggcacgggcaagacg
gcgagtttttcgctgccgatcatccagcgcctgttgcctatggcgagcacgagcgcatcg
cccgcacgccatccggtgcgggcgctgattctcacgccaacgcgtgagctcgccgaccag
gttgcagcgaacgtgcaggcgtattccaagcacacgccgttgcgcagcacggttgtgttc
ggtggtgtcgacatgaacccgcaatcggaagcgctgcggcgcggtgttgaaattctgatc
gccacgcccgggcgcttgctcgatcacgttcagcagaagacgctgaatctaggtcaggtg
cagattctcgttctcgacgaagccgaccggatgctcgacatgggcttcctgccggatctg
caacgcatcttgaatttgctgccgaaggaacgtcagacgctcttgttctcggccacgttc
tcgggcgaaatcaagaagcttgcagcaacctatctgcgcaatccgcaaaccattgaagtc
gcgcgtagcaattccacgaacgcgaacgtgcggcagatcgttttcgaagtcgcggaaagc
gataaatccggcgcagtgacccaactgattcgtgagcgcggcctgaagcaggtgctggtg
ttctgtaacagcaagatcggcgcgagccggctgtcgcgcgtgctggagaaggacggaatt
gttgcgaccgcgattcacggcgaccgtactcagggcgagcgcatgcaagcgctcgaggca
ttcaagaagggcgagatcgaggcgctggtcgcaaccgatgtggccgcccggggtctcgac
atcaccgacttgcccgcagtgatcaacttcgatctgccgttcagcgcggaagattacgtt
caccggattggccgtacgggtcgcgcgggcgcgtcgggcgacgctttgtcgttgtgcagc
ccgaacgagcgcaagcaactcgcggatatcgaaaagctgatcaagcgaccgctggaagtg
atggtgctgaaggttgatgtgccggtgcggcgcgaatcgtcttctgctcctcgtcgtgaa
gagcgctcgggccggccggagcgcggtgagcatcgacatgcgcgtagcgaggagccgcgc
cgtcgttcgacgtcgttcgagcgttcgcatacgcgtcaacaacctatcgacgatttcttc
ctgaagccgtacgagccgtcggcggcatcgacgagaaaaacgcaggacgacgccgctgcg
gaagccgaacgcaagaacacgccgcgtcagccgctggctgcgctgctcggtggcctcggt
atgccgcggagaacgccttcggggtcttga
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