Caballeronia sp. NK8: NK8_15690
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Entry
NK8_15690 CDS
T09553
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cabk
Caballeronia sp. NK8
Pathway
cabk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NK8_15690 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cabk03400
]
NK8_15690 (ligD)
Enzymes [BR:
cabk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NK8_15690 (ligD)
DNA repair and recombination proteins [BR:
cabk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NK8_15690 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCQ23440
LinkDB
All DBs
Position
1:complement(1638727..1641426)
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AA seq
899 aa
AA seq
DB search
MAEKLATYQRKRSFDKTPEPSGAAAKRSARAKKSAKRALSFVIQEHDARRLHYDFRLELD
GTLKSWAVPKGPSLDPSVKRLAVHVEDHPLDYGSFEGEIPEGNYGAGSVIVWDRGTWAPQ
SGSVDEAAREYEKGKLKFTLDGEKLHGGWTLVKSHMRGSGDKEQWLLIKERDDAARPETE
YDILLKKPGSVLSTSLGARDKSGAVRGRTERKASAKKAPARKTVSTKGNGHAHPDIVANR
SAESLRTLSHEPAIEGARKAKLPATFEPQLATLVDAAPPGDDWAYEIKFDGYRVLVRIET
IKGKREIRIHTRNGNDWTAKFSKQVKALERLDIESGWLDGEAVVLDHRGLPDFQALQNAF
DAGRPQDIVVYFFDAPYLNGYDLRHVPLVQRRAILKALIEPVDDPVLRCSQDFAFHAEAL
LKSACDMALEGIIGKRIDSTYVSGRSKAWIKLKCRRRQEFVIGGYSEPAGSRAQFGALLL
GVYDAHGKLQYAGRVGSGFDHATLVAVKKELDRRETQRMPFASEPQERSRTPVHWVRPEL
VAECNFAEWTKERIVRQASFVSLRDDKPARQIVKEVPASAKKVASKTTAKKAAVKSKATS
AEVEGVKISHPERVIDKSSGCSKLDVVEYYASVADWMLPHLKDRPVSLVRAPEDIGGELF
FQKHSAKLAIPHIKQHPDIDPGHPALLTIESAQALVGTAQMGTIELHTWNAVASNIEKPD
RMVFDLDPGEGVGWERMLEAAKLTKELLAELGLTSFCKTSGGKGFHVVVPLAKQASWDDM
KDFSQAVAQHMASTLPKLFSAKMGMQNRKGKIFIDYLRNNRGSSTVAAFSLRARPGLGAS
MPISWDELGDVKSGDQWHIGNVRERLDALKRDPWTGYDKARQRLTAAMKKRLGMNGSRK
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaaactcgcaacctatcagcgcaaacgcagcttcgacaagacgccggaaccg
tccggcgctgccgcgaagcgcagcgcgcgcgcgaagaaatcggcgaagcgcgcgttgtcg
ttcgtgatccaggaacacgatgcgcgtcgtctgcattacgacttccgtctcgaactcgat
ggcacgctcaagtcgtgggcggtgccgaaaggcccgagcctcgatccatcggtgaagcgg
cttgcggttcatgtcgaggatcatccgctggattacggttcgttcgaaggcgagattccc
gagggcaactacggcgcgggcagcgtcatcgtgtgggatcgcggaacgtgggcgccgcag
tcgggcagcgtcgatgaagctgcacgcgagtacgagaaaggcaagctcaagttcacgctc
gacggcgaaaagctgcatggcggctggacgctcgtgaagagccacatgcgcggcagcggc
gacaaggagcagtggctgctcatcaaggaacgcgacgacgcagcgcggcccgagaccgaa
tacgacatcctcttgaagaagcccggcagcgtgctgtcgacatcacttggcgcgcgcgac
aagagcggtgccgtgcgcgggcggaccgagcgcaaagccagcgcgaaaaaagcgccggcg
cgcaagacggtcagcacgaaaggcaatggacacgcgcatccggacatcgttgcgaatcgg
agcgccgagtcgttgcgcaccttgtcgcacgaaccggcgatcgagggcgcgcgcaaggcg
aagctgccggcgacgttcgagccgcagctcgcgacgctcgtcgatgccgccccgcccggc
gacgactgggcctacgaaatcaagttcgacggctatcgcgtgctggtgcgtatcgaaacg
atcaagggcaagcgcgagattcgcattcatacgcgcaacggcaacgactggaccgcgaag
ttttcgaagcaggtgaaggcgctggagcggctcgacatcgaaagcggctggctcgacggc
gaagccgtggtgctcgaccatcgcggtctgcccgatttccaggcgctgcagaacgccttc
gacgcgggacggccgcaggacatcgtcgtgtatttcttcgacgcgccgtatctgaacggc
tacgacctgcgccatgtgccgctcgtgcagcgtcgcgcgatcctgaaggcgctcatcgaa
cccgtcgacgatccggtgctgcgctgttcgcaggacttcgcctttcacgccgaggcgttg
ctcaagagcgcctgcgacatggcgctggaagggatcatcggcaagcgtatcgacagtacc
tatgtgtcggggcgcagcaaggcgtggatcaagctcaagtgcaggcgccgccaggagttc
gtgatcggcggctattcggagccggcgggcagccgcgcgcaatttggcgcgctgctgctc
ggcgtctacgacgcgcacggcaagctgcaatacgcgggacgcgtgggcagcggtttcgac
catgcgacgctcgtcgcggtgaagaaggaactcgaccgccgcgagacgcaacgcatgccg
tttgcgagcgaaccgcaggaacgcagccgcacgcccgtgcattgggtcaggcccgagctc
gtggccgagtgcaatttcgcggaatggaccaaggagcgcatcgtgcgacaagcctcgttc
gtcagtctgcgcgacgataaacccgcgcgtcagatcgtgaaggaagtgccggcatcggcg
aagaaggtggcgtcgaagaccacggcgaagaaggcggctgtgaagagcaaagccacttcg
gcggaagtcgaaggcgtgaagatcagtcatcctgagcgtgtgatcgacaaatcgtcgggc
tgttccaaactcgatgtcgtcgagtattacgcgtcggtcgccgactggatgctgccgcat
ctgaaggaccggcctgtgtcgctcgtgcgcgcgccggaagatatcggcggcgagctgttc
tttcagaagcacagcgcgaagctcgcgattccgcacatcaagcagcatcccgatatcgat
ccgggacatcccgcgctgctgacgatcgaatcggcgcaggcgcttgtcggcaccgcgcag
atgggcacgatcgaattgcatacgtggaacgcggtggcgtcgaacatcgagaagccggat
cgcatggtgttcgatctcgatccgggcgagggcgtcggctgggaacgcatgctcgaggcc
gcgaagctcacgaaggaactgctcgccgaactgggccttacatcattctgcaagacgagc
ggcggcaagggctttcatgtggtcgtgccgctcgcgaagcaggcgagctgggacgacatg
aaggacttctcgcaggcggtcgcgcagcacatggcgagcacgctgcccaagctcttctcc
gcgaagatgggcatgcagaatcgcaagggcaagatcttcatcgactatctgcgcaacaac
cgcgggtcgagcacggttgcggcgttttcgctgcgtgcgcgtccggggctcggcgcatcg
atgccgatctcgtgggacgaactcggcgacgtgaaaagcggcgatcaatggcatatcggc
aacgtgcgcgagcggctcgacgcattgaagcgcgatccgtggacgggctatgacaaggcg
cgtcaacggctcacggcggcgatgaagaagcggctcggcatgaacggctcgcgcaagtga
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