Corynebacterium afermentans subsp. lipophilum: CAFEL_04085
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Entry
CAFEL_04085 CDS
T09361
Symbol
ykoV
Name
(GenBank) putative DNA repair protein YkoV
KO
K10979
DNA end-binding protein Ku
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CAFEL_04085 (ykoV)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_04085 (ykoV)
DNA repair and recombination proteins [BR:
cafe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CAFEL_04085 (ykoV)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
TF_Zn_Ribbon
Rv2993c-like_N
Motif
Other DBs
NCBI-ProteinID:
WJY58594
LinkDB
All DBs
Position
complement(843706..844590)
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AA seq
294 aa
AA seq
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MRAVWTGSVTFGLVNVPVKAYGATEDHDLSFHQVHDKDHGRIRYERRCEVCGEKVEYKHI
DKAFEEDGDTVVITDEDFDSLPEADNDEIAVVQFVPADQIDPLMLEKSYYLAPEGKTPKS
YLLLRQTLLDSDLIAVVRFALRQKTRLGVLRVVNKVIVLQGLMWADEVRELDFDDEFKGT
KSRAKIGEKELKLSKQLVESYASDFTPEEFEDDYQAELRKLIDAKFEEGETLDTEATFGS
DGSDGADDSDEDDDNVVDLMAALKASLDKRSSGGGKSGSGKKSGKESAKKGKSA
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcagtttggaccggttccgtcacattcggccttgtcaacgtccccgtcaaggcg
tacggggcgaccgaggaccacgatttgtcattccaccaagtccacgacaaagaccacggg
cgcatccgctacgagcggcgctgcgaggtctgcggcgaaaaggtggagtacaagcacatc
gacaaagcatttgaagaagacggcgacaccgtcgtgatcaccgacgaagacttcgactcc
ctgcccgaagccgacaacgacgagatcgcagtcgtgcagttcgtgcccgcggaccagatc
gatccgttgatgctggagaagtcctactacctggcgcccgagggcaagacaccgaagtca
tatttgttactgcggcaaaccttgctggattcggatctgatcgccgtggtgcgcttcgcc
ctgcgacaaaagaccaggttgggcgtgcttcgggtggtgaacaaggtgatcgtgctgcag
gggctgatgtgggccgacgaggtacgcgagctcgacttcgacgacgagttcaaaggcacg
aaatcccgggcgaaaatcggtgaaaaggagctgaagctgtccaagcagctggtggagtcc
tacgcctccgacttcacgcccgaggagttcgaggacgactaccaggcggagctgcgcaaa
ctcatcgacgcgaagttcgaggagggcgagaccctggacaccgaggccacgttcggctct
gatggctctgatggcgcggatgattcggatgaagacgatgacaatgtggtggacctgatg
gccgcgctgaaggcgtcgttggacaagcggtcttccggtggcgggaagtctgggtccggg
aagaagtctgggaaagaatccgcaaagaagggcaagagcgcttaa
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