Costertonia aggregata: HYG79_01795
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Entry
HYG79_01795 CDS
T06693
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cagg
Costertonia aggregata
Brite
KEGG Orthology (KO) [BR:
cagg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cagg03009
]
HYG79_01795 (rlmD)
Enzymes [BR:
cagg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HYG79_01795 (rlmD)
Ribosome biogenesis [BR:
cagg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HYG79_01795 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Met_10
Methyltransf_25
MTS
Cons_hypoth95
Methyltransf_15
TRAM
PCMT
FtsJ
Methyltransf_12
PrmA
Methyltransf_11
N6_N4_Mtase
UPF0020
Methyltransf_32
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
QLG44134
UniProt:
A0A7H9ALA4
LinkDB
All DBs
Position
388278..389687
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AA seq
469 aa
AA seq
DB search
MRKKKRRQVFENVEVVDAGAKGKTIGKAPDGRVIFLTNTVPGDVVDVQTTKKRKAYFEGV
ATTFHSLSDKRVEPKCQHFGTCGGCKWQDMGYEHQLFYKQKEVENNLKRIGHLELPKISP
ILGSKKQYFYRNKMEFSFSDTRWLTLEELQSDTVFTDKNALGFHIPGMWDKILDIKKCHL
QQDPSNAIRLETKDFATKNGLTFFNPRHQHGMLRTLMIRTSSTGEIMVLVQFFEDDTAKR
NLLLNHLAEKFPEITSLLYVINKKQNDTIYDQEIICHAGRDHIFEQMEGLRFTINAKSFY
QTNSDQAYELYKITRNFANLNGDELVYDLYTGTGTIAQFISKKAKKVVGIESVPEAILDA
KANAKRNRIDNVDFFAGDMKNVFNTQFIAENGTPDVIITDPPRDGMHKDVVRQILDIGAK
KVVYVSCNSATQARDLALMKHMYKIKKVQPVDMFPQTHHVENVVLLEKL
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaaaaagaaaaggcgacaggtttttgaaaatgtagaagtggtagatgccggcgca
aaaggcaaaaccattggtaaagctcccgacggtagggttatctttttgaccaatacggtg
cccggtgacgtggttgatgtgcagaccactaaaaaaagaaaagcctattttgaaggcgtt
gcgacaacatttcattccttatccgataaacgcgttgaacctaaatgtcaacattttggc
acctgtggtgggtgcaaatggcaggatatgggttatgagcatcagctcttttacaaacaa
aaagaggtagagaataatctgaaacgtatcggtcatctggaactgcctaaaatctcacct
attttaggctcaaaaaaacaatacttctaccgcaataagatggaattttcgttttcggac
acccgatggttgactttggaagaattacagtccgataccgtatttaccgataaaaatgcc
ttaggatttcatattcccgggatgtgggataaaattctggatataaaaaaatgtcatctg
caacaagacccttccaatgccattcgcctggagaccaaggattttgcaactaaaaacggg
cttactttttttaatccgagacatcaacacggtatgcttcgcaccttaatgatccgtact
tcatcaactggtgagattatggtactggtccagttttttgaggatgataccgccaaaaga
aatttattactgaatcatttggcagaaaaatttccggaaatcacttcactgctctacgtc
atcaataaaaaacaaaatgataccatatacgatcaagaaataatctgccatgcaggtcgc
gatcatatttttgagcaaatggaaggcttgcgattcacaataaacgcaaaatcattttac
cagaccaattccgatcaagcctatgaactgtataaaataaccaggaacttcgccaattta
aatggggacgaactggtttatgacctgtatacgggtacgggcaccattgctcaattcata
tccaaaaaggcaaaaaaagtggtgggtatagaatctgttccagaagctattttagatgca
aaagccaatgccaaaagaaataggattgataacgttgatttttttgcgggcgatatgaaa
aatgttttcaatacacagttcatcgcagaaaatggaacgccagatgtaatcattacggat
ccgcctagagatggcatgcataaagatgtggtacgacaaatacttgatattggcgccaaa
aaagtggtttatgtaagctgtaacagcgcaactcaagcacgtgatctggcactaatgaag
catatgtacaaaatcaaaaaagtacagcccgtagatatgtttccccaaacccaccatgtt
gaaaatgttgtacttttggaaaagttataa
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