Citrobacter amalonaticus Y19: F384_24030
Help
Entry
F384_24030 CDS
T03934
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cama
Citrobacter amalonaticus Y19
Pathway
cama03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F384_24030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cama03019
]
F384_24030
03016 Transfer RNA biogenesis [BR:
cama03016
]
F384_24030
Enzymes [BR:
cama01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F384_24030
Messenger RNA biogenesis [BR:
cama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F384_24030
Transfer RNA biogenesis [BR:
cama03016
]
Prokaryotic type
tRNA degradation factors
F384_24030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
TFIIE_beta
MetOD2
Rho_RNA_bind
OB_Dis3
Sucrose_synth
Motif
Other DBs
NCBI-ProteinID:
AKE61420
UniProt:
A0A0F6RHT6
LinkDB
All DBs
Position
5148795..5151248
Genome browser
AA seq
817 aa
AA seq
DB search
MSQDPFQEREAEKYENPIPSREFILEHLTKREKPANRDELAAELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
DEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPAA
VEKQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDQEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
TKGRLTGYRFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAQEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQQYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLTGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNEGKTARERAKKGDAGKKTGRRRQVGKKANFEPDSAFRGEKKGKAGAK
PAAEKKGDRKAKKPSEKTQKIAAATKAKRAAKKKPAQ
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaagtacgaaaatcctatcccaagc
cgggaatttatcctcgaacatttaacaaaacgtgaaaaaccagccaaccgcgatgagctg
gctgcggaactgaacattgaaggcgaagagcagcaggaagccctgcgccgtcgtctgcgc
gcgatggagcgtgacggacaactggtcttcacccgtcgccagtgctatgcgctgccggaa
cgtctcgatctgctgaaaggtaccgttattggccaccgtgatggctacggctttctgcgt
gtcgaaggacgtaaagacgatttatatctttccagcgagcagatgaaaacctgtatccat
ggcgatcaggtgttggcgcaaccgttgggtgcggatcgtaaaggtcgccgcgaagcgcgt
atcgtgcgcgtgctggtgccgaaaaccagccagattgtcggtcgttacttcaccgacgcg
ggtgtgggttttgtcgttccggatgacagtcgtctgagcttcgatatcctgatcccaccg
gatgaggtgatgggcgcccgcatgggctttgtggtggtggttgaactcacccagcgtccg
acgcgccgtaccaaagcggtaggtaaaatcgtcgaagtgctgggcgataacatggggacc
ggcatggctgtcgatatggcgctacgcacccatgaaatcccgtacatctggcctgccgcc
gttgaaaaacaggttgccggtctgaaagaagaggtgcctgaagaggcaaaagtcggtcgt
gtggatttacgcgatttgccgctggtcaccatcgacggcgaagatgcccgcgactttgac
gatgcggtctattgcgagaagaaacgcggcggcggctggcgtttgtgggtggcgattgcc
gacgtgagttattacgtgcgtccaccgacgccgctggaccaggaagcgcgtaatcgcggg
acgtccgtgtacttcccgtcgcaggtagtaccgatgctgccggaagtgctctccaacggc
ctgtgctcactgaacccgcaggttgaccgcctgtgcatggtctgcgaaatgacagtgtcg
accaaaggccgtctgacagggtatagattctacgaagcggtgatgagctcgcatgcgcgt
ctgacctataccaaggtctggcatatgttgcagggtgatcaggatctgcgcgagcagtat
gcgccgctggttaagcatatcgaagagctgcacaacctctacaaagtgctggataaagcc
cgcgaagaacgtggcggtatctcgtttgaaagtgaagaagcgaagttcattttcaacgcg
gaacgccgtattgagcgaattgagcagacccagcgtaacgatgcgcacaagctgattgaa
gagtgcatgattctggcgaacatctcggcggcgcgtttcgttgagaaggcccaggagcct
gcgctgttccgtattcacgacaagccgaccaccgaggcgatcacctccttccgttccgtt
ctggcggaactggggctggagctgccgggcggtaacaaaccggaaccgcgtgactatgcg
gaattgctggaatcggttgccgatcgtcccgatgccgaaatgctgcaaacgatgctgctg
cgctcaatgaagcaggcgatttacgatccggaaaaccgcggtcacttcggcctggcgttg
caacaatatgcgcactttacgtcgccaatccgtcgttacccggatctctcgctgcaccgc
gccattaagtatctgttggcgaaagagcagggccataagggcaacaccaccgagacgggc
ggttaccactattcgatggaagagatgttgcaactgggccagcactgttcgatgaccgaa
cgtcgtgcggatgaagcaacccgtgacgtcgctgactggctgaagtgcgacttcatgctg
gatcaggtcggcaatgtctttaaaggtgtgattgccagcgtcaccggctttggcttcttt
gtgcgtctggacgagctgttcattgatggtctggtgcatgtttcctcgcttgataacgac
tactaccgttttgaccaggtagggcagcgtctgaccggcgaatccagcggccagacttac
cgtcttggcgatcgcgtggaagtgcgcgtggaagcggtcaatatggatgagcgcaagatc
gacttcagcctgatctccagcgaacgtgcgccgcgtaacgaaggtaaaacggcgcgcgaa
agagcgaaaaaaggcgatgcgggtaaaaaaaccggacgtcgtcgtcaggtcggcaaaaaa
gcgaactttgagcctgacagcgctttccgtggcgagaagaaaggcaaggccggggctaag
cccgcggctgagaaaaaaggcgatagaaaagcgaaaaagccttctgagaaaacgcaaaaa
atagcggcagcgacaaaagcaaagcgcgccgctaaaaagaaacccgcgcagtaa
DBGET
integrated database retrieval system
