Caldilinea aerophila: CLDAP_38680
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Entry
CLDAP_38680 CDS
T01797
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cap
Caldilinea aerophila
Brite
KEGG Orthology (KO) [BR:
cap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cap03016
]
CLDAP_38680
Enzymes [BR:
cap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CLDAP_38680
Transfer RNA biogenesis [BR:
cap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CLDAP_38680
Prokaryotic type
tRNA splicing ligases
CLDAP_38680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAM01908
UniProt:
I0I9H0
LinkDB
All DBs
Position
complement(4849284..4850738)
Genome browser
AA seq
484 aa
AA seq
DB search
MELKHLRQISDYEWEIPQSYRHDMRASVRIFATRRLLEQIADDQSLEQAVNAATLPGVVS
PVVVMPDMHQGYGFPIGGVAATAYPHGVISPGAIGYDINCGVRLLASGIEYEAALPYLDT
LATLLNTYCPSGVGSEGVVRVQVEELNKILREGARWALKHGYATEEDLERTEEGGRLEDA
DPAQVSERAKQRGREQIGSLGAGNHFIEVEVVEQIFHPEAARAMGLQEGCLAVQIHCGSR
GLGHQVCTDYVQSFQHAVHKYGIHLPDRELVCAPMDSPEGKAYMAAMRAAANFAFANRQL
LAHSARRAFEETFAGRFNKKEWRLRQVYDIAHNMGKLETHEREGRRLRVCVHRKGATRAF
GPGSPELPAEYQDIGQPVLVPGSMGTASWVLVGTETSMERSWGSTCHGAGRVLSRAKAKK
QVRGERLREELEAHGVKVRAGSMSGLAEEAPQAYKDVDMVVETVTHAGIARKVARLRPVA
VIKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaacatcttcgtcagatcagcgactacgagtgggagattccgcaaagctat
cgtcacgacatgcgcgcctcggtgcgcattttcgccacgcggcgtctgctggagcagatt
gccgacgatcaatcgctcgaacaggcggtcaatgcggcaaccctgcccggggtggtcagc
ccggtggtcgtcatgccggacatgcaccagggctatggctttcccatcggcggcgtggcg
gcgacggcctatccccacggcgtcatttcgcccggcgccattggctatgacatcaactgc
ggggtgcgactgctggcctccggcatcgagtatgaggcggcgctgccctatctagacacg
ttggcgaccttactcaacacctactgtcccagcggcgtcggcagcgagggcgtggtgcgc
gtgcaggtggaggagctgaacaagattctgcgcgaaggcgcgcgctgggcgctcaaacac
ggctatgccaccgaggaggatttggaacgcaccgaagagggcggccgactcgaagatgcc
gacccggcgcaggtgagcgaacgcgccaagcagcgcggccgcgagcagatcggttcgtta
ggcgccggcaaccacttcatcgaggtagaggtcgttgaacagatcttccatccggaggcg
gcgcgtgcgatgggacttcaggaaggctgtctggcggtgcagattcactgcggctcgcga
gggttagggcatcaggtctgcaccgactatgttcaatcctttcaacacgccgtgcacaaa
tacggcatccatctgcccgatcgcgagctggtgtgcgcaccgatggacagccctgagggc
aaggcgtacatggcggctatgcgcgcggcggcaaactttgccttcgccaaccgacagttg
ctggcgcactctgcacgccgggcttttgaagagacgttcgccggccgcttcaacaaaaaa
gaatggcgactcaggcaggtttatgacatcgcacataacatgggcaagctcgaaacgcat
gaacgagaagggcgacgtctgcgcgtctgtgtgcatcgcaaaggtgccacgcgcgcgttt
ggccctggctcgccggaattgccggcggaatatcaagacatcggccagccggtgctggtg
ccgggcagcatgggtacggcctcctgggtgctggtcggcacggagacgagcatggagcgc
tcgtggggctcaacctgccacggagcaggtcgggtgttaagccgggccaaggcaaagaag
caggtgcgcggggagcgcctgcgtgaagagctggaggcgcacggcgtcaaagtgcgcgcc
ggctcgatgtccggcctggccgaggaggcgccgcaggcgtacaaggatgtggatatggtg
gtggagacggtcacccacgccggcattgcgcgcaaggtggcgcggctgcggcccgtggcg
gtgatcaaagggtaa
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