Corynebacterium appendicis: CAPP_04330
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Entry
CAPP_04330 CDS
T09384
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
capp
Corynebacterium appendicis
Pathway
capp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
capp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CAPP_04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
capp03400
]
CAPP_04330
Enzymes [BR:
capp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CAPP_04330
DNA repair and recombination proteins [BR:
capp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CAPP_04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WJY60792
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Position
842237..844654
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AA seq
805 aa
AA seq
DB search
MGKNEYSVGGRTLTVSNLDKVLYPATGTTKADVMKYYLEVADVLIPQVVRRPVTRKRFPD
GVDVEAFFRKDLEESAPEWIPFGILTHKESTNRYPLAEEPAVLAWFAQVAALELHTPQWR
FGQHGYPDNPDRLVLDLDPGPGVGLAECAEVAHWCKEILDGMGMESVPVTSGSKGIHLYA
ALDGRSTAEQVTAVAKELARALEADNPDTVTSVMKKEQRRGKVFIDWSQNNGKKTTVAPY
SLRGREHPTVAAPRTWEELEESDLRQLEYTEVLERVAEGKDPIARLGAEKQDRLSTYRSM
RDPSKTAEPVPVDSPRDRSGEDPIFVIQEHHASSLHWDVRFERDGVLVSWAVPKGPPLDP
DMNRLAVQTEDHPIEYATFSGTIAKGEYGAGEVEIWDSGTIEVEKWREGKEVIAVLRGQK
DGGLGGVPRRYAMIHTAGMGGRGSSKSDNQWLMKFMKDQPEGESQAASTQVESAEMTLAD
MPEPMLATAGKESDIRLSRKEGEKWAFEMKWDGYRILAGVGGEKVVLSSRNGKDYTDFFP
QLRELAELVPGGAVLDGEVVALDDDGRPDFGALQALHSGDLDSESVEIRYMVFDILALGH
SGNGGQSLLRTPYEARRELLRKTVPEGDYVSVPPAHTGSLAEAMDVSRKLKLEGVVAKRL
GSVYLPGKRGSAWLKMKFQIHQEVIVVGVREGKGSRAGGIGSLLLAVPDDKTGELVYAGR
VGTGFSSKQLQEMEGKLGEKEVGEASISDVPDADRDGVWWVAPELVAEVALAGRTRDGKV
RHAVWRGWRDDKDADEVRWTDELRQ
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
gtggggaagaacgagtactcggtgggcggccggacactgacggtgagcaacctggacaag
gtgctctacccggcgacgggcacgaccaaagcggacgtgatgaagtactacctcgaggtc
gctgatgtgctgatcccgcaggtggtgcggcgcccggtgacgcggaagcgcttcccggat
ggtgtggacgtagaggcgttcttccgcaaggacctggaagaatccgcacctgagtggatt
ccgttcgggattctgacgcacaaggagtccacgaaccggtacccgttggcggaggaaccg
gccgttctcgcctggttcgcgcaggtcgctgcgttggaattgcacaccccgcagtggcgg
ttcgggcagcacgggtacccggacaatccggaccgtctggtgctggacctcgacccggga
ccaggagtggggctcgccgagtgcgcggaggtggcccactggtgcaaggagatcctcgac
ggcatgggtatggaatccgtcccggtcacctccggctcgaagggcatccacttgtacgcg
gcgttggatggccgcagtaccgccgagcaagtgacggcggtggccaaggaactcgcccgc
gcactcgaggccgacaatccggacaccgtgacatcggtgatgaagaaagaacagcggcgc
ggcaaggtcttcatcgactggagccagaacaacggcaagaagacgacggtcgcgccctat
tcgttgcgcgggcgcgaacacccgacggtggcggcgccgcgcacgtgggaggagctggag
gagtccgatctgcgtcagctcgaatacacggaggtgctcgaacgcgtcgcggaggggaag
gatccgatcgcgcggctcggcgcagaaaagcaagaccgcttatcgacgtaccgttccatg
cgcgatccttccaaaaccgccgagccggtacctgttgattcaccacgcgacaggtccggc
gaagacccgatcttcgtcattcaagagcaccacgcttcctctttgcactgggacgtgcgg
ttcgagcgcgacggcgtgctcgtctcctgggctgtgcccaagggaccgccgctggatccg
gacatgaaccggctggcggtgcagactgaagaccacccgattgagtacgccacattctcc
ggcacgatcgcgaaaggcgagtacggtgccggtgaggtggagatctgggattccggaacc
atcgaggtggagaagtggcgcgaaggtaaagaggtcattgctgttctccgcgggcaaaaa
gacggaggtctgggaggggtgccgcgccgctacgccatgattcacaccgccgggatgggt
gggcgcggtagctcgaagtcggacaaccagtggctcatgaaattcatgaaggaccagccg
gagggggagtcccaggcggcgtcgacgcaggtcgaaagcgcggagatgactctggcggat
atgcctgaaccgatgctggccaccgcaggaaaagagtcagatatccggcttagccgcaaa
gagggtgagaagtgggcgtttgagatgaaatgggacggctaccggattctcgccggagtg
ggcggcgaaaaagtggtgctctccagccggaacgggaaggactacaccgacttttttccg
cagctgcgagaactggcagagctagtgccgggtggggccgtgctcgacggggaagtcgtc
gcgctcgacgacgacggccgcccggacttcggggcgctgcaggcattgcattccggtgat
ctcgactccgaatcggtcgaaatccggtacatggtcttcgacattctcgcgctcgggcat
tcgggaaacgggggacaatcgctgttgcggactccgtatgaggcgcgccgggagctcctg
cggaaaaccgtgccggaaggtgactacgtgtctgtgccgccggcgcacactggctcgctc
gcggaagcgatggacgtgagccggaaactcaaactcgagggagtagtggcaaaacggctc
ggatcggtctacttgccgggaaagcgcggatctgcgtggctgaagatgaaattccagatt
caccaggaagtcatcgtggtcggcgtcagggaaggcaagggaagccgagcgggcggaatc
gggtcgcttcttctggcggttcccgacgacaagacgggggagcttgtctatgccgggcgc
gtgggcactgggttcagttccaagcagttgcaggaaatggaggggaaattgggggagaag
gaggtgggggaggcgtcgattagcgatgtgcccgatgccgaccgcgacggcgtgtggtgg
gtggcccctgagctcgttgccgaggtcgctctcgctggccggactcgcgacggcaaggtg
cggcatgccgtgtggcggggttggcgcgatgacaaagacgccgacgaggttcgctggaca
gacgagcttcggcaataa
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