Candidatus Paracaedimonas acanthamoebae: IM40_00765
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Entry
IM40_00765 CDS
T03240
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
caq
Candidatus Paracaedimonas acanthamoebae
Pathway
caq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
caq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IM40_00765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caq03021
]
IM40_00765
Transcription machinery [BR:
caq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IM40_00765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Herpes_Helicase
Motif
Other DBs
NCBI-ProteinID:
AIL12382
LinkDB
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Position
149143..151095
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AA seq
650 aa
AA seq
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MVRTTAELRDETQGEAAVELKKVDLKATLKKLIIKGKEKGYITYDQLNNALPQDEFSSEQ
IEDAMAVIAELGINVIEADEVDEEEAESSESSETESEDDLEEEGSTELAEGGRTDDPVRM
YLREMGRVELLSREGEIEIAKRIEDGRLMMIDAICESPLTIRAIISWRDALVENQISLRE
IIDIEDTSEEENPEEEELEEELVDEEEDNEEGENDKNEDAEESSENEAEQNPFSAQEEAL
KPQILEKFDKIAEIYESLYALQVERLKLAQEKKNQSSKNEKTFKELKKTLVELVSEIRFN
PLRIDQLVDQLYTLNRKLMGLEGKILRYATESGIQREKFLTVYFGRELDPDWLSSIKEFG
KSGDKFITKYGQEVQHIRDSVAEISVESGLNIAEFRRIVADVQKGDRQARRAKKEMIEAN
LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI
ADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLMMPVDKVRKVMKIAKE
PISLETPIGDEEDGSLGDFIEDKNAILPMDAAVNANLRETTTRVLSTLTPREERVLRMRF
GIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
attgtgagaacaaccgccgaacttcgtgatgaaacccaaggagaggccgctgttgagctt
aagaaggtagatctaaaggctactttaaagaagctcattatcaaagggaaagaaaaaggc
tacatcacttatgatcagttgaataatgctttgcctcaagacgaattttcttcagagcag
attgaagatgcaatggcagtgattgcagagcttggaatcaacgtcattgaagctgatgag
gttgatgaggaagaagctgaaagttctgagagctcagagactgagtctgaagatgatttg
gaagaagagggtagtactgagcttgccgaaggtggaagaaccgacgatccagtacgtatg
tatttgcgggaaatgggaagagttgaacttttgtcccgtgagggtgaaatagaaattgca
aaacgaatagaagatggtcgtttgatgatgatcgacgctatttgtgaaagccctcttacg
attcgagctatcatctcttggcgtgatgcattagtagaaaatcaaatttctttacgagaa
attattgatattgaagatacaagtgaagaagaaaatcctgaggaggaagagttagaagaa
gaactcgttgatgaagaagaagacaacgaagaaggcgaaaacgataaaaatgaggatgct
gaagagagtagtgaaaacgaagctgaacaaaatccgttttcagctcaagaggaagctctt
aaacctcaaatattagaaaaatttgataagattgcggaaatctatgagtctttgtatgct
ttacaagttgagcgtttgaaacttgctcaagagaaaaaaaaccaaagctcgaagaatgaa
aagacttttaaagaattaaaaaagacacttgttgagctcgttagcgagattcggtttaat
cctcttcgcattgatcaacttgttgatcaactttatactttaaatcgaaaacttatgggg
cttgagggtaagattctgcgttatgcaacagaatctgggatccaaagagagaaattttta
accgtttattttggtcgtgaacttgaccctgattggctatcttcaataaaagagtttggg
aaatctggggataagtttattacaaaatatggccaagaagtgcagcatatccgtgatagt
gttgctgaaatttctgttgagtctgggcttaatattgctgaatttaggcgtattgtcgca
gatgttcaaaaaggggatcgccaggcccgacgtgctaagaaagaaatgattgaggctaat
ttacgccttgttatttcaatcgcaaaaaaatataccaaccggggattgcaattcttggat
ttaattcaggaagggaatattgggctcatgaaagccgtggacaagtttgaatatcgtcgt
gggtataagttctcaacttatgcgacatggtggattcgccaggctattacgcgctcaatt
gcagatcaagcccgcacgattcgtatccccgtccatatgattgagacgattaataagctt
gtgcggacgtcgcgccagatgttacatgagattggtcgtgagccaacaccggaagagctt
gcagaaaaactcatgatgccagttgataaagtgcgcaaggtcatgaagatcgctaaagaa
cctatcagccttgaaacgccaattggtgacgaagaagatggaagtttgggcgattttatt
gaagacaaaaatgctattcttcctatggatgcggcagtaaatgcaaacctaagggaaaca
acaacgcgcgttctgtcaactctgacacctcgtgaagagcgtgttttaaggatgcgtttt
gggattggaatgaatactgatcatacccttgaagaagttgggcagcagttctctgtgacg
cgtgaacgtattcgacaaattgaagcaaaagcacttcggaagttaaaacacccgagtcgc
tcgagaaagttaagaagtttcttagactcttaa
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