Croceibacter atlanticus: CA2559_09353
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Entry
CA2559_09353 CDS
T01256
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cat
Croceibacter atlanticus
Pathway
cat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA2559_09353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cat03019
]
CA2559_09353
03009 Ribosome biogenesis [BR:
cat03009
]
CA2559_09353
Enzymes [BR:
cat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CA2559_09353
Messenger RNA biogenesis [BR:
cat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA2559_09353
Ribosome biogenesis [BR:
cat03009
]
Prokaryotic type
rRNA helicases
CA2559_09353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
EAP86229
UniProt:
A3U8U3
LinkDB
All DBs
Position
2049009..2050127
Genome browser
AA seq
372 aa
AA seq
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MKTFSDLGISPKLVKGLTELGIINPTEIQEQAIPVLLEKPTDFVGQAQTGTGKTAAYGLP
MLELINASKNHVQALVLCPTRELAMQVSKQLFKFTKYSDKIFSETVYGGAQIDKQIKALQ
RPTHIIVATPGRLVDLMKKKVVDLTNVKTVVLDEADEMLSMGFKKDLDTILSALPATKNR
WLFSATLPEGIRQIINSHLSSNAIKIKVSGKNVVNKKIEHKYILVEDADKLTTLLQYLKF
KGKERGIVFCKTKNTTKTLAKQLIAKNISADAIHGDLLQKERDKVMRAFKNESLRILVAT
DLTARGIDVEDLAFVVHYELPSQDEFYTHRSGRTARAGKEGMSLAIVNSKELKQLRFFEK
TLGISFSQIRQK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacattttcagacttaggcatttctcctaaactcgttaaaggacttactgaactt
gggattataaatccaaccgaaatacaagaacaggctattccagtactattggaaaagcct
acagattttgtaggccaagcacaaacaggtacaggtaaaactgcagcttatggtttacca
atgttagagcttattaatgcttctaaaaatcatgtacaggctttagtactttgtcctaca
agagagttagctatgcaagtttctaagcaactatttaagtttacaaaatactcagataaa
atattctctgaaacagtttatggtggtgctcaaatagataaacaaattaaagccttacaa
aggccaacacatattatcgtggcaacgccaggccgtttggtagatttaatgaagaaaaaa
gtagtagaccttactaacgtaaaaactgtggttttagatgaagcagatgaaatgttgagt
atgggttttaaaaaagatttggataccattttaagtgctttaccagctacaaaaaacaga
tggttattttctgcaacattaccagaaggcatcaggcagattataaactctcatttatct
agtaatgccatcaaaattaaggttagcggaaaaaatgtagtaaataagaaaattgagcat
aagtatattcttgttgaagatgcagataagctaaccacattattacaatatttaaaattt
aaaggtaaagaacgtggtatcgttttttgtaaaactaaaaacactaccaagactttagca
aaacaattaatagctaagaacatctctgcagatgctattcatggtgatttgcttcaaaag
gaaagagataaagttatgcgtgcttttaaaaatgaaagcttacgtattttagtagcaaca
gatttaactgcaagaggtatagatgtagaagatttagcctttgttgttcactatgaattg
cctagccaagatgaattttatactcacagaagtggtcgtacagctcgtgctggtaaagaa
ggaatgtctttagctatagtaaactcaaaagaattaaagcagcttagattttttgaaaag
actttaggtattagtttttcacagatacgacagaagtaa
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