Cygnus atratus (black swan): 118246198
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Entry
118246198 CDS
T09349
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cata00536
]
118246198 (COL13A1)
Glycosaminoglycan binding proteins [BR:
cata00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118246198 (COL13A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118246198
NCBI-ProteinID:
XP_050567979
EnsemblRapid:
ENSACYG00000009563
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Position
7:complement(25227239..25286181)
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AA seq
598 aa
AA seq
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MGIPGRPGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQKGEMGAAGPR
GQPGPPGQKGEKGQCAEYPHREYLSTTLAALRSNQILTLKGEQGQAGIQGPPGPPGPPGP
SGPAGPEGTPGQPGPIGPPGRVGEPGKPGRDGKGLPGPPGPKGDPGIQGYPGRKGAPGLA
TAGMKGEPGTPGEKGQPGVPGRMGPPGLPGKRGQRGEKGRAGDPGLPGLPGLKGEKGNSE
NALAGGKGEPGPPGLPGPPGPKGEAGDVGAAGPQGEKGEPGALGEQGPTGPRGPKGEPGK
DEMMDYDGNISEALQEIRTLALMGPPGLPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRG
KPGEMGPPGPHGLPGKDGPPGIKGEPGHAGAAGQKGDKGEPGQAGSPGLDGPTGEKGERG
DQGMPGPSGLPGPIGLPGLTGEKGEPGERGDKGNPGESMSGPPGPQGPPGPPGVQGLPGP
KGEAGIDGMKGEKGVQGEKGDRGPLGLPGTPGPMGVSGPAGPKGERGSKGDPGVVGPMGP
AGLPGLQGLPGDKGIRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggggattcctggacggccgggtgctccaggagaagcaggcatgtccatcatcgggccc
cgcggtccacccggacagcctggaactagaggttttcctggattcccgggccctattggc
ttagacggcaaaccgggtcatcctggacagaagggggagatgggtgctgcaggtcccagg
ggacaaccaggacccccaggacaaaaaggagaaaagggtcagtgtgcggagtacccccac
agggaatacctaagcaccaccctcgcagccctgcgctctaaccagatccttacgctgaag
ggcgaacaaggacaagcgggaatccaaggtcccccggggccccctggcccgccagggccc
tctggaccggctggacctgagggaacaccaggacagcccgggccaattgggccacctggc
cgagtgggagaaccggggaaacctggcagagatggaaagggcttacctgggcctcctgga
ccaaagggagaccctgggattcagggataccccggcagaaagggtgcccctgggttggcc
accgccgggatgaagggtgagcctgggactccaggagaaaagggacagcctggagtccca
gggaggatgggccccccaggtttgccagggaaaagggggcagcggggggagaagggacga
gctggtgaccctggacttcccggactccctggcctgaagggcgagaagggaaatagtgag
aatgccttggcaggaggtaaaggggaacctggccccccaggtctgcctgggccccctgga
ccaaagggagaagctggtgatgttggcgctgcaggaccgcagggggaaaagggggagcct
ggtgcactgggagagcagggacccacgggcccacggggccccaaaggagagcctgggaag
gatgaaatgatggactacgatggcaacatcagtgaagctctccaggaaatacgaactttg
gccttgatgggaccaccaggacttccgggtgtggctggacctccagggccaccaggacag
aagggtgaaattggcttgccaggtcctccaggccatgatggagaaaaggggccacggggc
aagccaggagaaatgggtccccctggccctcatgggctgccaggaaaggatggacctcct
gggataaagggagagccaggccatgctggggctgcaggacaaaagggggataaaggagag
ccaggacaagccggctcaccgggtcttgatggccccactggagagaaaggcgaacgaggt
gaccaagggatgccaggaccatcaggattgccgggtcccattggacttccaggattgaca
ggagagaagggcgagcctggggagcgtggagacaaaggaaacccaggagaatcgatgtct
ggcccccctggacctcaaggaccaccaggacctccgggtgttcagggcctcccgggaccg
aagggggaagcagggattgatggaatgaaaggagagaagggtgtccagggtgaaaaagga
gacagagggccactgggattacccggtactccaggaccaatgggggtttcaggaccagca
ggaccaaaaggagaaaggggcagtaaaggagatcctggtgttgtaggaccaatgggacca
gcaggacttcctggtttacaaggtctgcctggtgacaaaggaatccggggggagaggggc
aagaaaggctctagagggtctaaaggggataagggagaccaaggagcgcctggattagat
gcaccctgtccgttgggagaagatggcctcccggttcaaggctgctggaacaagtga
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