Carassius auratus (goldfish): 113057214
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Entry
113057214 CDS
T07313
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113057214 (col13a1)
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113057214 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113057214
NCBI-ProteinID:
XP_026080203
UniProt:
A0A6P6L6N7
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Position
38:15551363..15645514
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AA seq
749 aa
AA seq
DB search
MEDMKLRVSAQSSLERTCGQHPCQKRLLTNWRDACAIFVCLISFGVCVLLYLRTSDLQSR
VLSLEKDRDPRVSSWISLEQVEPVLWSRLDQILEEKLAARLPKIRAARDAPHSCNCPPGP
PGPPGRAGFPGDKGSMGIPGRMGLKGNLGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFP
GPIGLDGKPGQNGPKGDMGPRGPKGVPGEPGPKGEKGVCGDYTHRQMLPITVRNMPSISP
LILKRLKQGEPGAQGPPGPPGPPGPPGTPGLTGASGPPGKPGEPGKPGKDPRMLPGLKGE
PGVPGQKGDRGEVGPSGPEGPEGIKGDEGMKGEPGMDGQRGEKGEKGELGMPGMPGKQGV
KGEPGFPGVPGRKGQAGVSGIPGKRGYKGEKGEPSAEGAGIKGEPGAPGQPGQAGPKGDK
GDQGIKGDPGHEGPPGPRGLPGPTGEPGKSLINNNENDIRNLHLMGPPGLPGPPGLPGTP
GLKGDVGLPGPPGLDGEKGPRGKSGEQGPIGPPGPEGPRGEGGVIGLPGPKGDKGDMGPS
GSPGLDGPTGEKGVSGPPGHIGLPGLMGQKGEPGEKGDKAELVYGPAGPPGPAGPVGPLG
PPGLSGPKGEPGIGLRGEKGSPGQKGEKGDRGHLGLPGAHGLDGRPGPVGLIGPAGVPGP
AGPKGEMGEKGDMGVAGPIGPQGIPGLVGPPGLKGNRGERGKKGNRGAKGDKGDQGAPGL
DAPCPLGDDGLPVPGCWNKGQNPFQLAKK
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatgaagttgcgagtatcagctcagtccagtctggagaggacctgcggtcag
catccctgccaaaagcgccttctgacgaactggagggacgcgtgtgcaatcttcgtgtgt
ttgatctcgtttggagtttgtgtgttgctctacctgaggacgtcagatctgcaatccagg
gtgctcagtttggaaaaggacagagatccccgtgtctccagttggatctctctggaacag
gtggagcctgtcctgtggagtcgactggatcagatactagaggagaaattagcagcacgt
ctgccgaagatccgggcggctcgggatgcacctcacagctgcaactgtccaccaggtcct
cctggtccacctggacgagcaggctttccgggagacaaaggatcaatgggcattcctgga
agaatgggcttaaagggaaacctgggggagaagggagcgccaggagagccaggtctgtct
atcattggcccacgaggacctcctggacaacccggtactagaggatttccaggctttccg
ggccccattggcttggacgggaaacctggacagaatggtccaaaaggtgatatgggtcct
cgtggtcctaaaggagtaccaggtgaacctggtccaaaaggagagaagggtgtatgtggc
gactacactcacaggcagatgttgcccatcaccgtccgcaacatgccctcaataagccct
ctaatcctaaagcgcctcaagcagggcgagcccggagcgcaaggaccaccgggacctcct
ggccccccagggcctccagggactcctggactaactggtgctagcgggcccccgggtaaa
cccggagaacctggaaaacctggaaaagacccaagaatgctaccagggctgaagggcgaa
cccggtgtacctggacaaaagggcgatcgtggtgaagttggcccaagcggtcctgaaggc
ccagagggaattaaaggagatgaaggaatgaagggtgaaccagggatggatgggcaaaga
ggagagaagggggagaagggtgagctagggatgcctggaatgcctgggaaacaaggagtg
aagggagagcctggtttcccaggtgtccctggacgaaagggacaggcaggtgtttctggt
atccctggaaaacggggctacaagggagaaaaaggcgagcctagtgctgaaggagctggc
atcaaaggagaaccaggtgccccgggacagcctggacaagctggacccaagggtgacaaa
ggtgatcaaggcataaagggtgaccctggccacgaaggcccacctggaccaagaggttta
ccaggtccaactggagagccaggaaaatctttaatcaacaacaatgaaaatgatatacgc
aatctgcatttaatgggccctcctggtctgcctgggcccccagggcttcctgggaccccc
ggtttgaagggtgatgttggacttccaggtccccctggtcttgatggggaaaagggtcca
agaggaaagtcaggagaacagggacccatcggccctcctggaccagagggtccacgggga
gaaggaggagtcataggtttgcctgggccaaaaggagataagggagacatgggcccctcg
ggatcacctggtttagatggccctactggagaaaagggggtttcaggcccccctggccat
attggattgccaggcctaatgggtcagaaaggtgaacctggggagaaaggagataaagca
gaactggtctatgggcctgctggacctccaggacctgcagggccagttgggccattggga
cctccaggtttgtcaggaccaaagggagagccaggaataggcctgagaggagagaaggga
tcacctggacagaaaggagagaaaggagacaggggccatcttggactccctggggctcat
ggtttagacggcaggcctggtccagtgggtctgataggaccagctggagtgcctgggcct
gcaggaccaaaaggagaaatgggggaaaagggtgatatgggagtagctggaccaattggg
cctcaaggcatccctggtttagtaggaccaccaggattaaaaggaaaccggggggagagg
ggcaagaaaggcaacaggggggccaaaggggataagggagaccaaggagcccctggatta
gatgctccgtgtccgttgggcgatgatggtttgccagtaccagggtgttggaataaaggt
cagaatccgttccagctcgccaagaagtaa
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