Cereibacter azotoformans: LV780_00245
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Entry
LV780_00245 CDS
T07975
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cazt
Cereibacter azotoformans
Pathway
cazt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cazt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV780_00245 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cazt03019
]
LV780_00245 (rnr)
03016 Transfer RNA biogenesis [BR:
cazt03016
]
LV780_00245 (rnr)
Enzymes [BR:
cazt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LV780_00245 (rnr)
Messenger RNA biogenesis [BR:
cazt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LV780_00245 (rnr)
Transfer RNA biogenesis [BR:
cazt03016
]
Prokaryotic type
tRNA degradation factors
LV780_00245 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
UIJ30648
LinkDB
All DBs
Position
1:56218..58470
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AA seq
750 aa
AA seq
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MDQLPSKAQILDWIAQNPALSAKRDIARAFGIKGSAARIELKRLLREMEADGALEKRKRS
FAPQGALPPVSVLEITGPDAEGDLFARPLEWDAEGEPPRILFVPKKGDPAMAQGERILAR
LTEVEGEEHSHEARLIRRLGGAKPRILGIFRASADGGRILPIDKGEDKEWRVARDGAAGA
RDGELVEAEQVGPRRLGLPLARVTSRLGDPAGPRAVSLIAIHQHGIPDSFPDAVLAEAEA
AGPAPMGEREDLRHLPFVTIDPVDARDRDDAVLAEPDPDPQNPGGHVVWVAIADVAHYVR
PGSALDREARERGNSTYFPDRVVPMLPDALSGDLCSLHEEVDRPCMAVRMRLSAQGEKIS
HRFTRGMMRSRASLNYAQVQKAQDGQPDEATAPLLETIIRPLYEAYRALKHARAVRQPLD
LDLPERRIELSEDGRVLSVAFRERFDAHRLIEEFMVLANVAAAEELTRLRRPLLFRVHEE
PSPDKLEALREVAEASGFTLAKGQVLKTAHLNRLLAQAEGTEFDELLNITTLRSMTQAYY
HAENFGHFGLALRSYAHFTSPIRRYSDLIVHRALILAHGWGDDGLSAQDIEMLEETAKQI
SDTERRSMAAERDTTDRYLASWLSDRVGAEFAGRISGVQRFGLFVKLDESGADGLIPIRS
VGREFFHFDPESQTLMGADTGTVLGIGQRVTVRLAEAVPLTGGLTLELLTVEDRGLPAPK
RRRGRSAPRKPARDAARAGKAKRRVLRTRR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggaccaattgccctccaaagcccagatcctcgactggatcgcccagaaccccgccctt
tccgcgaagcgcgacattgcccgcgccttcggcatcaagggcagtgccgcgcgcatcgag
ctgaagcgcctcctgcgcgagatggaggcggatggcgcgctggaaaaacgcaagcgcagc
ttcgccccgcaaggcgccctgccgccggtctcggtgctcgagatcacgggcccggacgcc
gagggcgacctcttcgcccggccgctggaatgggacgccgagggcgagccgccccgcatc
ctcttcgtgcccaagaagggcgatcccgcgatggcgcagggcgagcgcatcctcgcccgg
ctgaccgaggtcgagggcgaggagcacagccacgaggcgcggctgatccggcggctcggg
ggcgcgaagccacggatcctcggcatcttccgggcgagtgcggatggcgggcggatcctg
ccgatcgacaagggtgaggacaaggaatggcgcgtggcgcgcgacggcgcggcgggggcc
cgtgacggcgaactggtcgaggccgagcaggtcgggccgcgccgtctcggcctgccgctg
gcccgcgtgacgtcccggctgggcgatccggcgggtccgcgcgcggtgtcgctgatcgcc
attcatcagcacggcatccccgacagcttccccgacgccgtgctggccgaggccgaggct
gcgggccccgcgccgatgggcgagcgcgaggatctgcgccacctgcccttcgtcaccatc
gatccggtcgatgcgcgcgaccgggacgatgcggtgctggccgagcccgaccccgatccg
cagaatccgggcggccatgtcgtctgggtggccatcgccgatgtggcccactacgtccgt
cccggttcggcgctcgaccgcgaggcgcgcgagcgcggcaactccacctacttccccgac
cgcgtcgtgccgatgctgccggatgcgctgtcgggcgatctctgttcgctgcacgaggag
gtggaccggccctgcatggccgtgcggatgcggctttcggcgcagggcgagaagatctct
caccgcttcacgcggggcatgatgcgctcgcgcgcaagcctgaactacgcgcaggtgcag
aaggcgcaggacggccagcccgacgaggcgacggcgccgctcctggagaccatcatccgg
ccgctctacgaggcctaccgggcgctcaagcacgcccgcgcggtgcgccagccgctcgac
ctcgacctgcccgagcgcaggatcgagctgtcggaggacgggcgtgtgctgtcggtggcc
ttccgcgagcggttcgacgcccatcggctgatcgaggaattcatggtgctggcgaacgtc
gcggccgccgaggaactgacgcgcctgcgccggccgctgctgttccgcgtccatgaggag
ccgtcgcccgacaagctcgaggcgctgcgcgaggtggccgaggcctccggcttcacgctg
gccaaggggcaggtgctgaagaccgcgcatctgaaccggcttctggctcaggccgagggc
accgagttcgacgagctgctgaacatcaccacgctgcgctcgatgacccaagcctattat
catgccgagaacttcggccacttcggtctggcgctgcgcagctatgcgcatttcacctcg
ccaatccgtcgctattcggatctgatcgtgcatcgggcgctgatccttgcgcatggctgg
ggcgatgacgggctgtcggcccaggacatcgagatgctggaagagacggccaagcagatc
tcggacaccgagcggcgcagcatggcggccgagcgggatacgaccgaccgctacctcgcc
tcctggctctcggaccgggtgggggcggaattcgccggtcggatctcgggggtgcagcgg
ttcggcctgttcgtgaaactcgacgagagcggggccgacggtctcatcccgatccggtcc
gtggggcgcgagttcttccatttcgatcccgagagccagaccctgatgggcgcggatacg
ggaaccgtcctgggcatcgggcagcgggtgacggtgcgccttgcggaagccgtgccgctg
acgggggggctgacgctggaacttctgacggtcgaggatcgggggttgcccgcccccaag
cggcggcgtggccggtcggcgccccgcaagcccgcccgtgacgcggcaagggccgggaag
gcgaagcgccgggtgttgcgcacgcggcggtga
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