Caenorhabditis briggsae (nematode): CBG_03060
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Entry
CBG_03060 CDS
T01054
Symbol
Cbr-crn-3
Name
(RefSeq) Protein CBR-CRN-3
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_03060 (Cbr-crn-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_03060 (Cbr-crn-3)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CBG_03060 (Cbr-crn-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
8572771
NCBI-ProteinID:
XP_002631256
UniProt:
A8WSW0
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Position
II:7596100..7598899
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AA seq
868 aa
AA seq
DB search
MSQPVEDNGEHDELVRENIQVMRKRVEEMTRTGAALVRESNGLPKSGADFELYNSYPTFN
AFMKRSEERLNALMGKITKSIGCAMRLPDVGSSIEHYTECVIEAQDNIAERVATLHGVLK
KAERDTIVKVPEFITKAGPTNRKTEAEVAEAMKTFSANIGTVLAAKFRERREEAAQMVVH
EKPQRTYNITSDNSSAPFASKLTVKHHAVERRSGIVVVDDNESGQRDWISASAETEEEHP
YIAEMLHFKVPEKQLKSVTPQKFKTLTETPLTIVDTKEKLESLRDKLNSVEEFSVDLEHH
EMRTYLGLTCLIQISTRDEDFIIDPFPMWDRIGILNEPFTNPNILKVFHGSDNDVLWLQR
DFGVHVVNLFDTYVAMKKLKYPKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYA
REDTHYLLYSYDMLREQLLQQGHKDLENVYAESNDLCIRVYKKPVFNPKGYMTEIKFRFT
LNNRQDFALTSLYRWRDIVARAEDESPQFVLPNHMLLSLAETLPRDVGGIYVCCNPLPYF
VKQRTGDILKIMVEARDIKLEKAERSVKEKTDAQEARGVMNDSMDYITSVLKSKIDFSHT
KFDEERGELDIDKNEEMKEILEKDHKESLLSVLESSSVAPNPEAMTVVEKGKKPDNKKIG
KLLNELDKFVTPFECYQMMLIAKQKQEEEDREEAERKRLEEGDKPKTMFSHHDAAVVRKP
EFDPKILNVDNLKVEATEAEEQQKETTMEEQAEPPIFDPSRFSDDQIMSKKAMKRKMQAA
RRNIDVSVVLGETSSCSDPKKIKTEEESGEVEEFDYNKADSSEFEKPVSDPNAAFDPFHQ
KYRLKNKSKKNNSMKKSSNRTGTINYKK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaccagtcgaggacaatggagaacatgatgaattggtgagagagaatatacaa
gtcatgagaaagcgagtggaggaaatgacaagaacaggagctgctttggttcgagaatcg
aacggtcttccaaaatctggtgctgattttgagctctataattcgtatccgacattcaac
gcgtttatgaaacgctcagaggaacgcctgaatgcactgatgggcaaaataacaaagtca
attggatgtgctatgagactgccagatgtcggttcaagtatcgagcactacacagaatgt
gtgattgaagcacaggataacattgcggaaagagtggcaactcttcacggagtactcaaa
aaagcagaaagggacactattgtgaaagtaccagagttcataacgaaagccggtccgaca
aatcgcaaaacggaagccgaagttgctgaagctatgaagaccttctcagctaacatcggt
actgtattagccgcgaagttcagagaacgaagagaggaggctgctcaaatggttgttcac
gaaaaaccacagagaacctacaacatcacaagtgacaactcatcggcaccatttgcttca
aaattgacagtcaagcatcacgctgtcgagagaagaagcggaattgtggtagttgacgac
aacgaatcaggtcaaagggattggatcagcgcttcggcagaaactgaagaagagcatcct
tatattgccgagatgctccatttcaaagttccagagaagcaactgaaatctgtcacacca
caaaaattcaaaactttgacagaaacaccgctgactatcgttgacacaaaggagaaattg
gaatcattgagggataagttgaacagtgttgaagagttttctgtcgatttggaacatcat
gaaatgcgaacgtatcttggcctcacttgtctcattcaaatctcaacaagagatgaggat
ttcatcattgatcctttcccaatgtgggatcgtattggaattctgaacgagccgtttacc
aatccaaatatcctcaaagttttccacggatctgataacgatgttctttggcttcaacgc
gattttggagtgcatgtcgtcaacctgttcgatacctacgttgcgatgaagaagctcaag
tatcccaagttcagtctcgcctatcttgcattccgttttgctgacgttgttctcgacaag
cagtatcagttggctgactggagagcaagaccacttcgaaatgcaatgattaattatgcc
agagaagacacccactaccttctttactcgtatgatatgttaagagaacaactgttgcaa
caaggacacaaggatctggaaaatgtgtatgcagagagtaacgatttgtgcatacgtgtt
tacaagaaaccagtgttcaatccaaaaggatacatgacagaaattaagttccgattcact
ttgaacaatcgacaagatttcgctcttactagtctctatcgttggagagatatcgtcgct
cgagccgaagatgagagtccccagttcgtcctccctaatcatatgctgttatctcttgct
gaaacgcttcccagggatgtgggaggtatttacgtatgctgtaatccactgccgtatttt
gtaaaacagcgtactggtgatattctcaaaatcatggtggaagccagagatatcaaactg
gaaaaggctgagagaagtgtgaaggaaaagacagatgcacaagaagcgagaggagttatg
aacgattctatggattatataacatccgtcctgaaatcgaagatcgatttttcacatacc
aagtttgatgaagagagaggagagcttgatattgataagaatgaagaaatgaaggagatt
ttggagaaggatcataaggaatcgctgctctctgttctcgaatcatcgtctgttgctcca
aatccagaagcaatgacagtggttgaaaaaggaaagaagccagataataagaaaatcgga
aaattattaaacgagctcgataagttcgtaactccatttgagtgctaccagatgatgttg
atcgcgaagcagaagcaagaagaagaggatagggaagaagccgaaagaaagagactggag
gaaggtgacaaaccgaaaaccatgttctcacaccacgacgcagctgttgtgcgaaaacca
gagtttgatccgaagattctcaacgtggataacctcaaggtggaagctacagaagctgag
gagcaacaaaaagaaacaacgatggaagagcaagcagaacctcctattttcgatccatct
cgattctcggacgaccaaatcatgtcaaagaaagcaatgaagagaaagatgcaagctgct
cgaaggaacatcgacgtttctgtcgtccttggagaaacatcaagttgttcggatccaaag
aaaatcaaaactgaggaagaatcgggcgaagtagaagagtttgactacaataaggctgat
agcagcgaattcgaaaagcctgtaagtgatcccaatgccgctttcgacccgttccatcag
aaataccgtttgaaaaataaatctaaaaagaacaattctatgaagaagtcgtcgaatcgt
accggaactattaattacaaaaaatga
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