Cupriavidus basilensis: RR42_s0524
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Entry
RR42_s0524 CDS
T03642
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cbw
Cupriavidus basilensis
Brite
KEGG Orthology (KO) [BR:
cbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cbw03016
]
RR42_s0524
Enzymes [BR:
cbw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RR42_s0524
Transfer RNA biogenesis [BR:
cbw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RR42_s0524
Prokaryotic type
tRNA splicing ligases
RR42_s0524
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AJG22117
UniProt:
A0A0C4Y9H7
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All DBs
Position
secondary:567044..568270
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AA seq
408 aa
AA seq
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MSKENYDVFLSGTGRPVKMWTHGVPVDDGARAQLANTAQMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMIAVKTTLTASDLPDSLGPLRSAIEKAVPHGRSSNRS
GRDKGAWGAVPDAVDASWAALAGGFERITRKYPKLARTNNRNHLGTLGTGNHFIEVCLDE
SQSVWFMLHSGSRGVGNAIGNTFIELAQADMRRHFINLPDRDLAYLVEGSEHYEDYVFAV
EWAQQYARRNRETMMANVLDAARAVIGKPFATEMEAVNCHHNYVQKERHFGEDVLITRKG
AVSAKAGELGIIPGSMGARSYIVRGKGNAESFCSCSHGAGRTMSRSEAKRRFSVEDQRLA
TQGVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggagaattacgacgtattcctgtccggcaccggccgcccggtcaagatgtgg
acccatggcgtgcccgtcgatgacggcgcgcgcgcgcagctcgccaacaccgcgcagatg
ccgttcatcttcaagcatctggccgtgatgccggacgtacacctgggcaaaggttccacc
atcggctcggtgattcccacacgcggcgccatcatcccggcggcggtgggcgtggatatc
ggttgcggcatgatcgccgtcaagaccacgctaaccgccagcgacctgcccgatagcctc
ggcccgctgcgcagcgccatcgagaaagcggtgccgcacggccgctccagcaaccgcagc
ggccgcgacaagggcgcctggggcgcggtgccggatgcggtggatgcgagctgggccgcg
ctggcaggtggcttcgagcgcatcacgcggaagtacccgaagctggcgcgcaccaacaac
cgcaatcacctgggcacgctgggcaccggcaaccactttatcgaggtctgcctggatgag
agccagtcagtctggttcatgctgcactcgggctcgcgcggggtgggcaatgccatcggc
aacacctttatcgagctggcgcaagcggatatgcgccggcacttcatcaacctgcccgac
cgcgacctggcctacctggtggaaggcagcgagcactatgaagactacgtgttcgcggtg
gagtgggcgcagcagtacgcgcgccgcaaccgcgagacgatgatggccaacgtgctggac
gccgcgcgcgctgtgatcggcaagccctttgccacggagatggaggcggtgaactgccac
cataactacgtgcagaaggagcgccacttcggcgaagacgtgctgatcacccgcaagggc
gcggtcagcgccaaggccggcgagcttggcatcatcccgggctcgatgggcgcgcgttcc
tacatcgtgcgaggcaagggcaatgcggaatcgttttgctcctgcagccacggtgcgggc
cgcaccatgagccgctccgaagccaagcgccggttctcggtggaagaccagcgactggcc
acgcaaggcgtcgagtgccgcaaggatgccgaagtcatcgatgagatcccgatggcctac
aaggacatcgacgcggtgatggcggcgcagtccgacctggtcgagatcgtccacacgctc
aagcaggtggtgtgcgtgaagggttga
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