Chlamydia caviae: CCA_00690
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Entry
CCA_00690 CDS
T00125
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta` subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cca
Chlamydia caviae
Pathway
cca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCA_00690 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cca03021
]
CCA_00690 (rpoC)
03400 DNA repair and recombination proteins [BR:
cca03400
]
CCA_00690 (rpoC)
Enzymes [BR:
cca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCA_00690 (rpoC)
Transcription machinery [BR:
cca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCA_00690 (rpoC)
DNA repair and recombination proteins [BR:
cca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCA_00690 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
HetE-N
Mei5
Motif
Other DBs
NCBI-ProteinID:
AAP05432
UniProt:
Q822J2
LinkDB
All DBs
Position
complement(795174..799355)
Genome browser
AA seq
1393 aa
AA seq
DB search
MFGEGSRDNATLSKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK
TTPSRIGNVLGMTASDLERIIYYEEYVVIDPGKTDLNKKQLLNDAQYREVVEKWGKDAFV
AKMGGEAIYDLLKSEDLQSLLKELKDRLRKTKSQQARMKLAKRLKIIEGFVSSSNHPEWM
VLKSVPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYFPEDHGGKIKIFRDVTEV
LRALYTGGFLDERINNRCDETGRGIHIHEKIKVRIDGQIIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFIQATKAAISMGLKDVRIPEIKSE
ILKEAYDKVAVVKKQYDDGIITDGERHSKTISIWTEVSELLSDALYVEISKQAKSKHNPL
FLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKG
LADTALKTADSGYLTRRLVDVAQDVIITEKDCGTLNHIEISAIRQGSEELLPLKDRIYGR
TVSEDIYQPGDKSKLLAKNGDVVTSAQAELIDDAGIESIKIRSTLTCESRRGVCAKCYGL
NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVTDNDGILVYMD
LRVVVGQDGNHLVLNKKGAIHVVRDEGRSLEEYKKLLSTKSIESLETYPVELGVKILVGD
GEKVSSGQRIAEVELHNIPIICDKPGFVKYEDLVEGISTEKVVNKNTGLVELIVKQHRGE
LHPQIAIYSDAGLTELVGTYAIPSGAIISVEENQKVDPGMLLARLPRGAIKTKDITGGLP
RVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLIPLTKHLIVQ
RGDNVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIVRQ
MLQKVRITDPGDTTLLFGEEVNKKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTESF
ISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQYLEKEQED
LVFDFESESECAC
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgttcggagaaggttctcgagacaatgccactctatccaaagaggggctatttgataaa
ctagaaattggaattgcctcagatattactattcgcgataagtggtcttgtggggaaatc
aagaagcctgaaacaatcaattaccgtacgtttaaacctgaaaaaggtggattgttttgc
gaaaagattttcgggcctacgaaggattgggaatgttgttgtggtaaatataagaagatt
aaacacaagggcattgtctgcgatcgctgtggagtagaggtcaccctttctaaggtacgt
cgtgaacgtatggctcatatagagcttgcagtgcctattgtgcacatatggttttttaag
actacaccttcaagaatcggtaacgtcttaggaatgactgcatctgatcttgaaaggatt
atctactatgaagaatatgtagttatcgatccaggtaagacagatttaaataagaaacag
cttttaaatgacgctcaatatcgagaagtagttgagaagtggggtaaagacgcttttgtt
gctaaaatgggcggagaagctatttacgatttattaaaatcagaagatcttcaaagttta
ttgaaagagcttaaggatcgtttgcgaaaaacaaaatctcagcaagctagaatgaagctc
gctaaacgattaaagatcattgaaggttttgtttcctcttctaatcatcctgagtggatg
gttttaaaaagcgttcctgttgttccacccgatcttcgtccattagttcctttagatggc
ggaagatttgcaacttctgatttaaatgatttatatcgtcgtgtaattaaccgtaacaat
cgtctaaaagctattttaagattaaaaactcctgaagtgatcgttcgcaacgaaaaacgt
atgttacaggaagctgtggatgcgttatttgataacggtcgtcatggacatcctgtaatg
ggagcgggtaatcgtcctttaaaatctctttctgaaatgttgaaagggaaaaatggacgt
ttccgacaaaaccttttaggtaagcgtgtcgactattctggacgttctgttattatcgtc
ggccccgaattgaaatttaatcaatgcggtttacctaaagaaatggctcttgagttattc
gaaccattcattattaaaagacttaaagatcaaggaagcgtctacactattcgctctgct
aagaaaatgattcaacgcggggcccctgaagtttgggacgttttagaagaaattattaaa
ggtcatcccgtattacttaaccgagctcctacgcttcaccgtttagggatacaggctttt
gagcccgtattgattgaaggtaaagctattcgtgttcacccgttagtgtgtgcagcgttc
aacgccgacttcgacggagaccaaatggctgttcacgtgccactgtctattgaagcacag
ctagaagctaaagttttgatgatggctcctgacaacatcttcttaccatcttccggaaag
cctgttgcaacaccttctaaagatatgacgttgggtatttactatctaatggctgatcct
acttacttccctgaagatcacggtggaaaaattaagatctttagagatgttactgaggta
ttgcgcgcattatatacaggtggattccttgatgagcgtataaataaccgttgtgatgag
actggacgtggtatccacatccatgaaaaaattaaagtgcgtattgatggtcagattatt
gagaccactcctggacgcgttctgtttaatagaattgttcctaaggaattagggtttcaa
aattacagcatgccaagtaagcgtatcagtgaattgattttacaatgctataagaaagtt
ggtcttgaagcgactgtgcgtttcttagatgaccttaaagatctagggtttatccaagcg
acaaaagctgcgatctccatgggattgaaagacgttagaattcctgagattaagagtgag
attcttaaagaagcttacgataaagttgctgttgttaagaagcaatacgatgacggtatt
atcacagacggggagcgtcattctaagactattagtatttggacggaagtttctgaattg
ttatcagatgctctttatgttgagattagtaagcaagctaagagcaaacacaatccttta
ttcttaatgattgattctggagctcgaggtaataaatctcagttgaaacagttaggagcc
ttgcgaggtttgatggcgaagccaaacggagcgattattgaatctccgattacttcaaat
ttccgcgaagggttaacagttcttgaatactcgatttcttctcacggtgctagaaaaggt
ttagccgatactgccttaaaaacagcggactctggatacctaacgcgaagactcgttgac
gtagctcaggatgtaattattacagagaaagattgcggaacattgaatcatattgagatt
tctgcaattcgccaaggttctgaagaacttttacctttgaaggatcgtatttacggtcgt
acggtgtctgaagacatttatcagccaggggataagagcaagcttcttgctaagaatgga
gatgttgttacatctgctcaggcagaactcattgacgatgctggtatcgaaagcattaaa
attcgttctacacttacttgtgaaagccgtcgcggtgtttgtgctaagtgttatggattg
aatcttgctaatggtcgcctcattggtttaggggaagctgtaggtattattgctgctcag
tctattggggaaccaggaacacagttgacaatgagaacgttccaccttggaggtatcgct
gcgacatcttcaactccagaaatcgttacagataatgacggtattttggtgtatatggat
cttcgggttgttgtaggtcaagatggcaaccatctggtattgaacaagaagggagcgatt
cacgttgttcgtgatgaaggccgtagtctagaagaatacaagaagctcttaagtaccaaa
tctatcgaaagtttagagacttatccagtagagcttggtgtaaagattttggttggcgat
ggggaaaaagtatcctcaggtcaaagaattgctgaagttgagctgcataatattccaatt
atctgtgataaacctggttttgtgaaatatgaagacttagtggaaggtatttctacagag
aaagttgtcaataaaaacacaggattagtcgagcttattgttaaacagcatcgcggggaa
ttacatcctcaaattgctatttactctgatgccggtttaacagaattagttggaacatac
gcaattccttctggagctattatttctgttgaagaaaaccaaaaagttgatccaggtatg
ttgttagcgagattacctcgtggagcaatcaagactaaggatattactggtggtttaccg
cgggttgctgaattggttgaagctagaaaacctgaagatgctgcagacattgcgaagatc
gatggtgttgtagattttaaaggaattcagaaaaacaaacgtattcttgttgttcgtgat
gaaatcactggaatggaagaagaacacttaattccattgaccaaacacttgattgttcag
cgtggagataacgtgatgaaagggcagcagctaacagatggtttagttgttcctcatgaa
atcttggaaatctgcggtgttcgcgaattacagaaatatttagtaaatgaagttcaagaa
gtttatcgtctgcaaggtgtggatattaacgataagcacattgaaatcattgttcgtcag
atgttgcagaaagttcgtattaccgatccaggtgataccactttactttttggtgaagaa
gttaataagaaagagttttacgaagaaaatagacgtacagaagaagatggtggtaaacca
gctcaagctgttcctgtgttattgggaattactaaagcttcgttgggtacagaatcattt
atttctgcagcgtccttccaagatacgactcgtgtattgactgatgcggcttgcagtagc
aaaactgactatctcttaggattcaaagaaaatgtcattatgggacatatgattccagga
ggtacagggtttgatacacataagcggattaagcaatacttagaaaaagaacaagaggat
cttgttttcgactttgaaagcgaatctgaatgcgcttgttaa
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integrated database retrieval system
