Clavibacter californiensis: FGD68_12820 Help Entry FGD68_12820       CDS       T08592                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism ccaf  Clavibacter californiensis Pathway ccaf03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:ccaf00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     FGD68_12820  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:ccaf03400]     FGD68_12820 Enzymes [BR:ccaf01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      FGD68_12820 DNA repair and recombination proteins [BR:ccaf03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      FGD68_12820 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S Motif Other DBs NCBI-ProteinID:  UKF79661 LinkDB All DBs Position 2656925..2659453 Genome browser AA seq 842 aa AA seqDB search MAGTKQQVEVDGHRIALTNLDKVLYPATGTTKGDVIAYYAAIAPHMLPHLRDRPVTRKRW VDGVGTDESPGKMFFQKDLDAHTPEWVQRRAIQHRDHANDYPLVGDVATLTWLGQIAALE LHVPQWRFGRTGDVRRPDRLVLDLDPGPGTGLPECVEVAKAARAILRDMGLDPYPVTSGS KGIHLYAALDGSHDADAISEVAHELARALEADHPDLVVSDMRKALREGKVLVDWSQNNPA KTTVAPYSLRGRSRPMVAVPRTWRELASPTLRHLELDEVVARMRKRRDPLAPVEEGHRES LEPTRERLAGFARKEPDADAPADDRLATYRSKRDAAKTSEPVPAESPAPSEGRSFVIQEH HARALHWDFRLEHDGVLVSWALPKGVPTEHGTNHLAVQTEDHPLEYGSFEGTIPAGEYGG GEVTIWDAGTFELEKWRDGEEVIATLHGTGDGTGIDGPRRYALIHTGGHGKADANWLIHL MEPADAPAKAHAKAHARPARPAALAKAGGRTRVGARRKGGSASAPAPMLATAATGAGLDP AEEWAVEMKWDGYRAIAVVADGRATITSRNGVDLTPAFPELAELPDSLDVDAAVLDGEIV VLGAGGRPDFGLLQTRLGLTGEKEIARARKAAPVHLMLFDALAIGDRVLVEEPYRDRRAA LLDAVRSPGRRRIQVPPAFDGDLDGALATSRELGLEGVVAKRVDAPYESGRRSSAWIKIK HHRTQEVVVGGWRPGSGGRASGVGSLLVGVPGPDGLAYAGRVGTGFTERDLAEALRRFHP LARKTSPFADVPAADARDAHWITPRLVGEVEFAEWTSTGRLRQASWRGWRHDKSPDEVVR ED NT seq 2529 nt NT seq  +upstreamnt  +downstreamnt atggcggggacgaagcagcaggtcgaggtcgacgggcaccggatcgcgctcacgaacctc gacaaggtgctgtacccggccaccggcacgaccaagggcgacgtcatcgcgtactacgcc gccatcgcgccgcacatgctgccgcacctccgcgaccggcccgtgacccgcaagcggtgg gtcgacggcgtcggcaccgacgagtcgccggggaagatgttcttccagaaggacctcgac gcgcacacgccggagtgggtgcagcggcgggcgatccagcaccgcgaccacgcgaacgac tacccgctcgtcggcgacgtcgcgacgctcacctggctcgggcagatcgcggcgctcgag ctgcacgtgccgcagtggcgcttcggccgcacgggcgacgtgcgccgccccgaccggctc gtgctcgacctcgaccctggcccgggcaccggcctccccgagtgcgtcgaggtcgcgaag gcggcgcgggcgatcctccgcgacatgggcctcgacccgtacccggtgacgagcggatcc aaggggatccacctctacgccgcgctcgacggcagccacgacgcggatgcgatctccgag gtcgcgcacgagctcgcccgcgcgctcgaggccgaccaccccgacctcgtcgtcagcgac atgaggaaggcgctgcgcgagggcaaggtcctcgtcgactggagccagaacaaccccgcg aagaccacggtcgcgccgtactcgctgcgcgggcgctcccggccgatggtcgccgtgccg cgcacctggcgcgagctcgcgtcgccgacgctccggcacctggagctggacgaggtcgtc gcgcggatgcggaagcgtcgggatccgctcgcccccgtcgaggagggccaccgcgagagc ctcgagccgacgcgcgagcggctcgcgggcttcgcgcggaaggagcccgacgccgacgcg cccgccgacgaccgcctcgcgacctaccggtccaagcgcgacgccgccaagacgagcgag cccgtgccggcggagtcgcccgcgccctcggagggccgctccttcgtgatccaggagcac cacgcccgcgcgctgcactgggacttccggctggagcacgacggcgtcctcgtgagctgg gccctccccaagggcgtgcccaccgagcacggcacgaaccacctggcggtgcagaccgag gaccaccctctggagtacggatccttcgagggcacgatccccgcgggcgagtacggcggc ggcgaggtcaccatctgggacgcgggcaccttcgagctggagaagtggcgcgacggcgag gaggtcatcgcgacgctgcacggcacgggcgacggcaccggcatcgacgggccccggcgg tacgcgctcatccacacgggcgggcacggcaaggccgacgcgaactggctgatccacctg atggagccggcggacgcgccggcgaaggcgcacgcgaaggcgcacgcgaggccggcacgg cccgcggcgctcgcgaaggccggcggacgcacgcgcgtcggcgcgcggcggaagggcgga tccgcgtccgctcccgcacccatgctcgccacggccgcgaccggtgccggcctcgacccc gccgaggagtgggcggtcgagatgaagtgggacggctaccgcgccatcgccgtcgtcgcc gacggccgggcgaccatcacgagccgcaacggcgtcgacctcacgcccgccttccccgag ctcgctgagctgcccgactccctcgacgtcgacgccgccgtgctcgacggcgagatcgtc gtgctgggcgcgggcggccgccccgacttcggcctcctgcagacccgcctcggcctcacg ggcgagaaggagatcgcgcgcgcccggaaggccgcgcccgtgcacctcatgctcttcgac gcgctcgcgatcggcgaccgcgtgctcgtggaggagccctaccgggatcgccgtgccgcg ctcctcgacgcggtccggtcgccgggccgccggcggatccaggtcccgcccgccttcgac ggcgacctcgacggggcgctcgccaccagccgggagctcggactcgagggcgtcgtcgcc aagcgcgtcgacgcgccctacgagtcgggccgccggtcgagcgcatggatcaagatcaag caccatcggacgcaggaggtcgtggtcggcgggtggcggcccggatccggcggccgcgca tccggcgtcggctcgctgctggtcggcgtccccggccccgacggcctcgcgtacgcgggc cgcgtcggcacgggcttcaccgagcgcgacctcgccgaggcgctccgccgcttccacccg ctcgcccgcaagaccagcccattcgccgacgtgcccgccgccgacgcccgcgacgcgcac tggatcacgccccgcctcgtcggcgaggtcgagttcgccgagtggacctcgacgggccgc ctccgccaggcgtcgtggcgcggctggcggcacgacaagtcgcccgacgaggtcgtccgc gaggactga

DBGET integrated database retrieval system