Ceratina calcarata (carpenter bee): 108630308
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Entry
108630308 CDS
T06061
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108630308
Enzymes [BR:
ccal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108630308
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108630308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
AAA_22
nSTAND3
ATPase
HA2_N
AAA_14
Motif
Other DBs
NCBI-GeneID:
108630308
NCBI-ProteinID:
XP_017888997
LinkDB
All DBs
Position
Unknown
AA seq
1155 aa
AA seq
DB search
MSSRYEFHKSKREYKHNQQSDRQRKSKYDSRLSYRNHDRRDNENDVTQEVPQKYFEDFCF
SQYKHELNKVFTGSLNVVQDTDDFWKFVNKYEGLQKKLKTPDVPPNYSLNNIGVPETYHK
SHCINFKLSYNFNELFARVPPAEALTKERLLKFQNVIVLYLDFKQKEKFTKLKKLRETQA
NLPVYQHKDEIVKTVRQERVVIIAGDTGCGKSTQVPQYLYASGFQRIACTQPRRIACISL
AKRVAFETLTENRTDVGYQIRFEKQKNQDTKIIFITEGLLLRQLSGDAELSYDVIVLDEV
HERHLHGDFLLGIMKCIINQRQDLKLVLMSATINIELFSNYFSKEDVKVIQVPGRLYPIQ
LLYRPVTIEDIRYKNDRFNPSPYIQIMQMIDQKYPADEKGDLLIFLSGMSEITAVVDAAK
EYSQKKNNWIVLPLHSTLAISEQDKVFDYPPEGVRKCIVSTNIAETSITIDGIRFVADSG
KVKEMSYDPTCKMQRLKEFWISKASAEQRKGRSGRTGPGVCYRLYSEEEYTALEKYSTPE
LQRVPLDSLLLQMIAMGLPDARKFPFIEPPPAESIENSILSLKEHDALTDNEKITCIGKT
LARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYRDSECETSRKKLESDH
GDPITLLNAFREWLEVKQQSSQECRGSGSSSKKWCRRRGLEEQRFYEMTKLRAQFKDLLQ
DCSLLKSLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSEPRKRKKLKLESFDIQIEDN
DQDDGEIDIKDIEFRMRNDPSQVQNLLTAATACSYKDLTMLKLILCSGLYPQFACADEFN
YCKSTNEQLFHTKAKPYIALHPMSFFGNHPQILQLEESDVVSIPGFKSKTPVSPKHTILT
YLSLLETTKPYLVNTLRMPAAQTLLLFARQIDTNSIFSIIVCDSWLQLEFPVPDSGQILL
MKATKLRHKWDFLLNQRLKDSRDDEKQDFSEIEYSLTQELIEYMHTTVPYTLKRLLPADL
KTIYVGNDENKAVVDPNPFQSDFEIIPHPMKGGVRVTNAITYNCIRETEWSDKLAVEMLE
TEWYCQNCNMQAVLTSIEKLQHQHSCTKTVTEDTEKRTDVVKRKPNSQAYECPDCAQTLY
LTPIEILKHKKSHVK
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagttcacggtatgaatttcataaatcaaaacgcgaatataaacacaatcagcagagt
gataggcaaagaaaaagcaaatatgattcgagattatcatacagaaatcatgatagaagg
gataacgaaaatgatgtcactcaagaagttcctcagaaatattttgaagacttctgcttc
agccagtacaaacacgaattgaacaaagtattcacaggaagtttaaatgtggttcaggat
actgacgatttttggaaatttgttaacaagtacgagggtctgcaaaagaaattgaaaaca
cctgatgtgccacctaattattccttaaataacattggtgtgccagaaacatatcacaaa
tcacattgtatcaatttcaaattgagttacaattttaatgaactgtttgcacgggttcca
ccagctgaagcattgactaaagagagattactgaagtttcagaatgtaattgtattatat
ttagatttcaagcaaaaagagaagttcaccaaattgaagaagctgagagagacacaagca
aatttgccagtttatcaacacaaagatgaaatcgttaaaacagtaagacaagaacgagtt
gttatcatagctggtgatactggctgtgggaaatccacccaagtgcctcaatatttatat
gcatcaggttttcaaagaattgcctgtacacaaccaaggagaatagcttgcatatcctta
gcgaaacgcgttgctttcgaaacgttaacggagaatcgcaccgatgtcggttatcaaatt
cgttttgagaagcaaaagaatcaagatacaaaaattatattcataacagaaggtctttta
ctaagacagttatctggagatgcagaattgtcttacgatgtgatcgtgttagatgaggtt
catgagcgtcatttacacggagattttctccttggcattatgaagtgcatcattaatcaa
agacaagatctaaaattagtacttatgtctgcaactattaatattgagctctttagcaat
tacttttccaaagaagacgttaaagtaatacaggttcctgggcgattgtatcctattcaa
ttattatacagacctgtcactatagaagatattcgctacaaaaatgacagatttaatcca
agtccatatatacaaataatgcaaatgattgaccaaaagtatccagctgatgagaaggga
gacttgttaatattcttaagtggaatgagtgaaataactgcagtcgtagacgcagcaaag
gagtacagccagaaaaagaataattggatcgtattaccacttcatagtactctagctatt
agcgaacaagataaagtattcgattatcctcccgaaggggtaagaaagtgcatcgtgtcg
acgaacattgccgaaacttctatcaccatagacggtatcagattcgttgccgatagtgga
aaagtaaaagaaatgagttacgacccaacgtgtaaaatgcaacggctgaaggaattctgg
attagcaaagccagtgctgaacagcgcaagggaagaagcggtagaaccggacccggagta
tgttatagattatattcggaagaagaatatacggctttggagaagtactccactccggag
ttgcaacgcgtaccattggattcgttgcttttacaaatgatcgcgatgggacttccggac
gcgcggaagtttccattcatagaaccaccgccggcggaaagcatagaaaattcaatattg
tcgttgaaagaacatgatgcattgacggataatgaaaaaataacgtgcattggaaagaca
cttgctcgtttacctgttgatataacgatagggaagatgttgataatgggttctatcttt
catcaagtagagccagtattgtcgttagctgctgccttgagcatacaaacaccgttcacg
aacagagcttacagagactccgaatgcgagacatctagaaaaaaattggagtctgatcac
ggcgatccaataacgttactaaatgcctttagagaatggttagaagtgaaacaacagagt
tctcaagagtgtagaggtagcggtagtagtagtaaaaaatggtgcagaagaagaggatta
gaagaacaacgattttacgaaatgacaaaattgagagcgcaattcaaagatttactacag
gattgcagtttactgaaaagtcttccagagccaaattcttcaatgtctagcgcggaacgc
gctatcagacacggagaactgaaactcttgaaatccttaaaaagaacttacaaacaaagt
gaacccaggaaacgaaagaagcttaaactagaatctttcgatatacaaatagaagataac
gatcaggatgacggcgaaattgatataaaggatatcgaatttcgtatgaggaatgatccg
agccaagtgcagaatctgttgacagcagccactgcatgcagttacaaggatttaacaatg
ttgaagttaatactgtgcagtggtttgtatccacaattcgcatgtgccgatgaatttaat
tattgtaagtcaacaaacgagcagctattccacacgaaagcgaagccttacattgccttg
catccaatgagtttctttggaaatcatcctcagatattgcaattagaagaatctgatgtc
gtatcaataccaggatttaaaagcaaaactcctgttagtccgaagcatacaatattaaca
tacttatctttactggagacaaccaaaccttatttggtgaatacactccgaatgcccgct
gcgcaaacattgcttttattcgcacgtcaaatcgatacaaacagtatattttcaattata
gtttgcgattcctggttacaattggagttccctgttcctgacagtggtcagattttatta
atgaaggctaccaagttaagacacaagtgggattttttattgaatcaacgattgaaagat
tcacgtgacgacgagaaacaagatttcagcgaaatcgagtattcgcttactcaagaattg
atcgagtacatgcacactacagttccatatacgttgaaacgacttttaccagctgatctc
aaaacgatatacgtaggaaatgatgagaataaggcggtcgtagatcctaatcctttccaa
tcagatttcgaaataattccgcatccgatgaaaggaggagttcgcgtaacaaatgccatt
acatacaattgtataagggaaaccgaatggagcgacaaactagctgtagaaatgctcgaa
accgagtggtactgtcaaaattgtaacatgcaagcagttttaactagcatagaaaaatta
cagcaccaacactcatgtaccaaaacggttacggaagatactgagaaacgaacagatgtt
gtgaaacgcaaacctaacagtcaagcatacgagtgtcccgattgtgcacagacattgtac
ctgacaccgattgaaatacttaaacacaaaaagtcacacgttaaatag
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