Cupriavidus campinensis: M5D45_20855
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Entry
M5D45_20855 CDS
T08350
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccam
Cupriavidus campinensis
Pathway
ccam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M5D45_20855 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccam03400
]
M5D45_20855 (ligD)
Enzymes [BR:
ccam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M5D45_20855 (ligD)
DNA repair and recombination proteins [BR:
ccam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M5D45_20855 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
URF07639
LinkDB
All DBs
Position
2:complement(678520..681189)
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AA seq
889 aa
AA seq
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MAQPTRATRAADPAPDAAEPLGKYRRKRDFAATPEPSGGKAAKGTKTARKRAAPALSFVV
QKHAARRLHYDFRLELDGTLKSWAVPKGPSYDPADKRMAVHVEDHPLDYANFEGVIPAGH
YGAGTVIVWDRGTWVPDGDPAAAHRAYRDGKLKFELRGEKLKGHWTLVRMRGKRQRDDQR
DDQRDNNGWLLIKERDEYAQAASAFNVVDAMPDSVLAGTARAAKKVAKKAPAKSAKSAAA
KKANARDLPALPEGAKKAKLPLALAPQLATLVEKAPADSSQWQYEIKFDGYRVLARIDGD
DVRLFTRQGNDWTSKLRGLAAEIRTLGLPDGWLDGEIVVVDAQGITDFQALQNAFETSRA
DAIQFYAFDLPYYAGHDLRAVPLDQRRLLLRRLFEANTAPRLHFSESFEASPDEMLAAAC
RMKLEGVIGKRNDAPYVSTRANTWIKLKCTLRQEFVIGGFTDPKGSRSGLGALLLGVHDA
QGKLRYAGNVGTGFDTAMLGTLRKQLDPLVTDAPPFDDLPRGIRGHWVKPKLVAEVSFGA
WTREGRVRHAVFHGLRTDKPAGAVSVEKPAAAAKSAKSAAKKAPARKAPAKETIGKIVVS
HADRVIDTSTGLTKGDLVRYYASAAGLMLPYLKGRPIALVRAPSGVEGEQFFQRHGDTLK
IDGVRPLDPKLWPGHPPLLEIATEAAIVAVAQLNVVEFHTWNAVARSLDKPNRIIFDIDP
GEGVKWPAIQEAAALTKGLLDELGLQSFLKTSGGKGLHVVVPLAPRANWGWEPVRDFAQA
VVQHMAATIPDRFVAKSGPRNRVGKIFIDYLRNGVGATTAAAFSARARPGLGVSVPVAWE
ELGDLTSAAHWTIANVGPRLEEMARHDPWAGHDAVRQTLTQASRRLAGS
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggctcaacctacccgtgccacccgtgccgccgaccccgctccggacgccgccgaaccg
ctcggcaaataccggcgcaagcgcgacttcgcggccacgccggagcccagcgggggcaag
gcagccaagggaaccaagaccgcccgcaagcgcgcggcgccggcgctgtccttcgtggtc
cagaaacacgccgcgcggcggctccactacgacttccggctcgaactggacggcacgctg
aagagctgggcggtgcccaaggggccgagctacgacccggccgacaagcgcatggccgtg
cacgtggaggaccaccccctcgactacgccaacttcgaaggcgtgattccggccgggcac
tacggcgccggcacggtcatcgtgtgggaccggggcacctgggtgcccgacggcgacccg
gccgccgcccatcgcgcctatcgggacggcaagctcaagttcgaactgcgcggggagaag
ctcaagggccactggaccctcgtacgcatgcgcggcaagcgccaacgtgacgaccaacgc
gacgaccagcgcgacaacaacggctggctgctgatcaaggagcgcgacgagtacgcgcag
gccgcgtcggccttcaatgtggtggacgccatgccggacagcgtgctggccggcacggcc
agggcggcgaagaaggtggcaaagaaagcaccggccaaatcggccaagtcagcagccgcc
aagaaggccaacgcccgcgacctccccgctctgcccgagggcgccaagaaggccaagctg
ccgctggcgctggcaccccagctcgccacgctggtggaaaaagcgccggccgacagcagc
cagtggcagtacgagatcaagttcgacggctaccgcgtgctggcccggatcgatggcgac
gacgtgcgcctgttcacgcggcagggcaacgactggacgtcgaagctgcgcggcctggcg
gcggagatccgcacgctgggcctgcccgacggctggctggacggcgagatcgtggtggtg
gacgcgcagggcatcaccgacttccaggcgctgcagaacgcgttcgagacctcgcgcgcg
gacgccatccagttctacgccttcgacctcccctactacgccggccacgacctgcgcgcc
gtgccgctggaccagcgccggctgctgctgcgccggctgttcgaggccaacaccgcgccc
cggctccatttcagcgagagcttcgaggccagcccggacgagatgctcgccgccgcctgc
cgcatgaagctggaaggcgtgatcggcaagcgcaacgacgcgccctacgtcagcacgcgc
gccaacacgtggatcaagctcaaatgcacgctgcggcaggagttcgtgatcggcggcttt
accgacccgaagggcagccgcagcgggctcggcgccctgctgctgggcgtgcacgacgcg
cagggcaagctgcgctacgccggcaacgtcggcaccggcttcgacaccgcgatgctcggc
acgctgcgcaagcagctcgacccgctggtgacggacgccccgccgttcgacgacctgccg
cgcggcattcgcggccactgggtcaagccaaagctggtagcggaggtgtccttcggcgcc
tggaccagggagggccgcgtgcggcatgcggtgttccacggcctgcgcacggacaagccg
gccggcgcggtctcggtagagaagccggcggcggcggcgaaatcggccaagtcggcagca
aagaaagccccggccaggaaagccccggccaaggagaccatcggcaagatcgtcgtcagc
catgcggaccgggtcatcgacacctccaccgggctgaccaagggcgacctcgtgcgctac
tacgccagcgcggccgggctgatgctgccctacctcaagggccggccgattgcactggtg
cgcgcgccgtccggcgtggagggcgagcagttcttccagcgccatggcgacaccctcaag
atcgatggcgtgcgcccgctcgaccccaagctctggcccggccatccgccgctgctggag
atcgccacggaggccgccatcgtggcggtggcgcagctcaatgtggtggagtttcacacc
tggaacgcggtggcgcgcagcctcgacaagccgaaccggatcattttcgacatcgacccc
ggcgagggcgtgaaatggccggccatccaggaggccgccgcgctgaccaaggggctgctg
gacgaactggggctgcaaagcttcctgaaaaccagcggcggcaagggcctgcacgtggtg
gtgccgctggcgccgcgggcgaactggggctgggagccggtgcgggacttcgcccaggcc
gtggtgcagcacatggcggccactattccggaccgtttcgtggccaagagcgggccgcgc
aaccgggttggcaagattttcatcgattacctgcgcaacggtgtcggggctaccacggct
gccgcgttctcggcacgtgcgcggcccgggctgggcgtgtccgtgccggtggcctgggag
gagctgggcgacctgacctcggcggcgcactggaccatcgccaacgtgggcccgcgcctt
gaggaaatggcccggcatgacccgtgggccgggcacgacgccgtgcgccagacgctgacc
caggccagcaggcggctggccgggtcctga
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