Castor canadensis (American beaver): 109695885
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Entry
109695885 CDS
T04791
Symbol
Col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
ccan
Castor canadensis (American beaver)
Pathway
ccan04151
PI3K-Akt signaling pathway
ccan04510
Focal adhesion
ccan04512
ECM-receptor interaction
ccan04820
Cytoskeleton in muscle cells
ccan04974
Protein digestion and absorption
ccan05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ccan00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
109695885 (Col6a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109695885 (Col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109695885 (Col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109695885 (Col6a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
109695885 (Col6a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
109695885 (Col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccan04147
]
109695885 (Col6a1)
00536 Glycosaminoglycan binding proteins [BR:
ccan00536
]
109695885 (Col6a1)
Exosome [BR:
ccan04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109695885 (Col6a1)
Glycosaminoglycan binding proteins [BR:
ccan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109695885 (Col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
109695885 (Col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Creatininase
YcaO
Motif
Other DBs
NCBI-GeneID:
109695885
NCBI-ProteinID:
XP_020034247
UniProt:
A0A250Y6J1
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MRVAGALLPLLMQACWVATQEVPGTSKAIAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRDELKASVDAI
KYFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSIGAEEVISQTIDTIVDMIK
NNVEQVCCSFECQPARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGYPGLPGCKGSPGFDGIQGPPGP
KGDAGAFGLKGEKGEAGADGEAGRPGSSGPPGDEGEPGEPGPPGEKGEAGDEGNAGPDGA
PGEKGGPGERGPRGTPGVRGPRGDLGEPGPQGDQGREGPVGIPGDPGEAGPIGPKGYRGD
EGPPGPEGLRGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRGPPGLNGTK
GYPGLKGDEGEAGDPGEDNTDVSPRGVKGAKGYRGPEGPQGPPGHVGPPGPDECEILDII
MKMCSCCECKCGPIDILFVLDSSESIGLQNFEIAKDFIIRVIDRLSKDELVKFEPGQSHA
GMVQYSHNQMQEHVDMRSPNIRNAQEFKEAVKKLQWMAGGTFTGEALQYTRDRLLPPTQN
NRVALVITDGRSDTQRDTTPLSVLCGPDIQVVSVGIKDVFGFVAGSDQLNVISCQGLLPQ
GRLGISLVKENYAELLDDAFLKNITAQICIDKKCPDYTCPITFSSPADITILLDGSASVG
SHNFHTTKLFAKRLAERFLSAEREDPSQEVRVAVVEYSGQGQQQPGRAALQFLQNYTVLA
STVDSMDFFNDATDVNDALSYVTRFYRETSSGAAKKRLLLFSDGNSQGATAAAIEKAVQE
AQRAGIEIFVVVVGHQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPSYQALLRGVFYQTV
SRKVALG
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgagggtggccggtgcactgctgcccctgctgatgcaggcctgttgggtggccacacag
gaagtcccagggacctcaaaggccatcgccttccaagactgccctgtggacttgttcttt
gtgctggacacctctgagagcgtggccttgaggctgaagccgtatggggccctggtggac
aaggtcaagtccttcaccaagcgcttcatcgacaacctgagagacaggtactaccgctgt
gaccgcaacctggtgtggaatgcaggtgccctgcactacagcgatgaggtggaaatcatc
cgtggactcacgcgcatgcccagcggccgtgatgagctcaaggccagcgtggacgccatc
aagtactttggcaagggcacctacaccgactgcgccatcaagaaggggctggaggagctg
ctcattgggggctcccacctgaaggagaacaagtacctgattgtggtgactgatgggcac
cccttggaaggctacaaggagccgtgtgggggtctggaggatgcagtgaatgaggccaag
cacctaggcatcaaggtcttctctgtggccatcacgcctgaccacttggagccacgtctg
agcataattgccacagaccacacgtacaggcgtaacttcacagccgcagactggggacag
agcatcggtgcagaggaggtcatcagccagaccattgacaccattgtggacatgattaaa
aacaatgtggagcaagtgtgctgctccttcgagtgccagcctgccagaggacctccagga
cctcgaggggaccctgggtatgagggcgagcgaggaaagcctggtctccccggagagaaa
ggagaagctggagaccccggaaggcctggggacctgggaccagtcgggtaccagggaatg
aagggagaaaaggggagccgtggggagaagggctccaggggacccaaaggctacaagggc
gagaagggcaagagaggcatcgatggagtggatggcatgaagggggagacagggtaccca
ggcctgccaggctgcaagggctcaccaggattcgatggcattcaaggaccccctggcccc
aaaggtgatgctggcgcctttggactaaaaggagaaaagggcgaagctggagcagatggg
gaggctgggagacctgggagctcgggaccacctggagatgagggcgagccaggagagcct
gggccccctggagagaaaggagaggctggtgacgagggcaatgcaggaccagatggtgcc
ccaggagagaagggtggccctggagaaagaggacctcgggggaccccaggtgtacgggga
ccaagaggagatctgggtgaacctggaccccaaggtgaccagggaagagaaggccccgtc
ggcattcctggagacccgggtgaggctggcccaattggacctaaaggataccgcggtgat
gagggtcctccaggacctgagggtctcagaggtgccccaggacctgccgggccccctgga
gacccagggctgatgggtgaacggggtgaagacggtccccccggaaacggcactgagggc
ttcccaggcttccccggatatccaggcaacaggggccccccagggctaaacggcaccaaa
ggctaccctggcctcaagggagacgagggtgaagctggggaccctggagaggataacact
gatgtttcaccccgtggggttaaaggggcgaaggggtaccgaggcccagaaggcccccag
ggacccccaggacacgtgggaccacccgggcctgatgaatgtgagattttggacatcatc
atgaaaatgtgctcctgctgcgagtgcaagtgtggccccatcgacatcctctttgtactg
gacagctctgagagtattggcttgcagaactttgagatcgccaaggactttattatcagg
gtcattgaccgtctgagcaaggacgagctggtcaagtttgagccagggcagtcccatgcg
ggcatggtgcagtacagccacaaccagatgcaggagcatgtggacatgaggagccccaac
atccgcaatgcccaggagttcaaggaagccgtcaagaagctgcagtggatggcaggtggc
acgttcacgggggaggcgctccaatacacccgggaccggctgctgccacccacccagaac
aaccgcgttgccctggtcatcacggacggacgctcagacacgcagagagacaccacgccc
ctcagcgtgctctgcggccctgacatccaggtggtctccgtgggcatcaaagacgtgttt
ggctttgtcgcgggctcagatcagctcaacgtcatctcctgccaaggcctgttgccccaa
ggccggctgggcatctcactggtgaaggagaactatgcagagttgctggatgatgccttc
ctgaagaatatcacggcccagatctgtatagacaagaagtgcccagactacacctgtcca
atcacgttctcctctccggctgacatcaccatcttgctggatggctccgccagtgtgggc
agccataactttcacaccaccaagctcttcgccaagcgcctggccgagcgcttcctgtcg
gcggagcgggaagacccctcccaggaggtgcgggtggcagtggtggagtacagcggccag
ggccagcagcagccagggcgggcagccctgcagttcctgcagaactacacggtgctggcc
agcaccgtggacagcatggacttcttcaacgatgccaccgatgtcaacgacgcactgagc
tacgtgactcgcttctaccgcgagacctcgtcgggcgccgccaagaagaggttgctcctg
ttctcagacggcaactcgcagggggccacagcagcggccatcgagaaggcagtgcaggag
gcccagcgtgcgggcatcgagatctttgttgtggtggtaggccatcaggtgaacgagccc
cacatccgcgtgctggtcacaggcaagacggcagagtacgatgtggcctttggcgagcgt
cacctattccgtgtgcccagctaccaggccctgctccgtggcgtcttctatcagacagtt
tccaggaaggtggcgttgggctag
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integrated database retrieval system
