Cynara cardunculus var. scolymus (artichoke): 112516582
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Entry
112516582 CDS
T05604
Name
(RefSeq) serine/threonine-protein kinase VPS15-like isoform X1
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
112516582
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ccav01001
]
112516582
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112516582
Enzymes [BR:
ccav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
112516582
Protein kinases [BR:
ccav01001
]
Serine/threonine kinases: Other
VPS15 family
112516582
Membrane trafficking [BR:
ccav04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
112516582
Autophagy
Autophagosome formation proteins
PI3K complex
112516582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Pkinase
NBCH_WD40
HEAT
PK_Tyr_Ser-Thr
HEAT_EZ
HEAT_2
TCAD9
Adaptin_N
Cohesin_HEAT
APH
Motif
Other DBs
NCBI-GeneID:
112516582
NCBI-ProteinID:
XP_024979474
LinkDB
All DBs
Position
LG 8:2758347..2773146
Genome browser
AA seq
1548 aa
AA seq
DB search
MGNKIARTTQASASEYYLHDLPSSYNLVLKEVLGRGRFLKSIQCKHDEGLILVKVYFKRG
DSVDLRDHERRLSQIREIFGRIENPHVWPFQFWLETDKAAYLLRQYFFNNLHDRLSTRPF
LSLVEKKWLAFQLLYAVQQSHANGVCHGDIKCENVLVTSWNWLYLADFASFKPTYIPHDD
PSDFSFFFDTGGRRRCYLAPERFYEHGGEIQIAHDAPLRPSMDIFAVGCVIAELFLEGQP
LFELSQLLAYRRGQFDPTQHLEKIPDSGIRKMILHMIQLDPDLRCSAESYLQSYAGVVFP
CYFSPFLHNLYSNLNRNNSDSRVALCQLSFPEILKQMLGNRAGEETVHGLHFGTNVTNRR
TSHAVDRQNLVSMKGHSQTEKEKKRLSFDHFELRGDIGTLLIDGKENTRYANVKPKMEDA
ISSTNSQKQSAVQSPGKLLQTISNVFKRNHHPFLKEITMSDLNSLLSDYDNQSDTFGMPF
LPLPQDSMSCEGMVLIASLLCSCIRNVKMPQLRRSAVLLLRSCSLYIDDEDRLQRVLPYV
IAMLSDSAAIVRSAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVRICY
AGNISKLALTAYGFLIHSISLTEAGVLNDLSSTQKSGASSHEIPGRLQSQKNDAQLAQLR
KSIAEVIQELVMGPKQTPNIRRALLQDVGNLCWFFGQRQSNDFLLPILPAFLNDRDELLR
SVFFGQIIYVCFFVGHQSVEEYLLPYLEQALGDSTEAVIVNALDCLAILCRSGFLRKRIL
LEMIEHSFPLLCYPSQWVRRSVVTFITASSESLGAVDSHVFLVPLIRPFLRRMPASLASE
RALFSCLKPPVRRQTFYQILEKSKSSDMLERQRKIWYNSSAQSKQPENVDMYQKGVGELD
PMKMWSDRQHDLLGHPPVSSIQPFGLIENDTEAKLRSASSFARNASGTVDIHDPLFSDKM
KFSGFMSPQLSVVNSLIGDKSSEGIPLYYFKYDKRATGNASTASNSSLPIDPLGSASLSM
PWMDPVNKSFTLSSSVPSPGLVSSSISIGNSSPQLHRVVHELEDRESDKTAYLSNKFNDM
GVSNSSKGSSIGGADSSPPTEVAGLPSFSRTPTTPDSGWRPRGVLVAHLQEHRSAVNDIA
ISTDQSFFVTASDDSTVKVWDSRKLEKDITFRSRLTYSLEGSRALCTTMLHGSAHVVAGA
SDGTIHTFSVDYVSRGLGNVVEKYSGIADVKKSNIGEGAILTLLNYSKDGDDGKMILYST
QNCGIHLSDMRENSNSWNTKVIPEEGYISALVASPCGNWFVSGSSRGVLTLWDLRFGIPV
YSWQYSGACPIEKMCLFVPPQSTSLSITVRPLVYAAAGCNEVSLWNAENGSCHQVLRLAN
SDSDAEISELPRALARPPSKTNSKGDARRSANFKYRVDELNEPPPRSPGIRSLLPLPGGD
LLTGGSDLKIRRWDHYSPEKSYCICGPSMKGVGNDDLYETKSSFGVQIVQETRRRPLATR
LTGKAVLAAAATDSGGCHRDSILSLASVKLNQRLLISSSRDGTLKVWK
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atgggtaataagatcgcaagaacgacgcaagcttcggcgtcggagtattacctccacgac
ttaccctcgtcgtacaatttggtgctcaaggaagtgttgggaagaggccggttcttgaag
tcgatacagtgcaagcacgacgaaggattgattctagtcaaggtctatttcaagcgtggt
gactccgttgatcttcgggatcatgagagaagattatcgcagattcgggagatatttggc
cgtattgaaaaccctcacgtttggcctttccagttttggctcgaaacagataaagctgct
tatttgttgaggcagtacttcttcaataatcttcatgaccgattgagtacacggcctttc
ctcagccttgttgagaagaaatggttggcgtttcagttgctttatgcagtacaacagagt
catgctaatggagtttgtcatggggatatcaaatgtgagaatgtgctggtgacttcttgg
aactggctttaccttgctgactttgcatcgtttaaaccaacctatattccgcacgacgat
ccatccgatttctcctttttctttgatactggaggaagaagacgctgctatcttgcaccg
gagaggttttatgagcatggaggtgagattcaaattgcacatgatgcacctttaaggcca
tcaatggacatctttgctgttgggtgtgtcattgcagaacttttccttgagggtcagccc
ctctttgaattatctcaactacttgcctatcggagggggcaatttgatccaacccagcat
ttggagaagattccagattccggtatacgcaagatgattcttcatatgattcagcttgat
cctgatttacgctgttctgctgagagctacctgcagagctatgcaggcgttgtgtttcca
tgctacttctcaccattcctgcacaatttatattccaatttgaatcgaaataattctgat
tctcgggttgcactgtgccagctttccttcccagagatacttaaacagatgttaggaaat
agagctggtgaggagactgtgcatggactacactttggaacaaatgttaccaatcgtcga
acatcacatgcagtggacagacaaaatttggtatcgatgaaaggccactcacagacggag
aaagaaaagaaaagattgagttttgatcattttgaacttcggggtgatattggtactcta
cttattgatggtaaagaaaatacccgttatgctaatgtaaagccaaaaatggaggatgct
atctcttctacaaattctcaaaaacagtcggccgttcaatctcctggaaaactacttcaa
actatctccaatgtatttaaaaggaatcatcatccctttctgaaagagatcacgatgagt
gatttgaactcgttgctatctgactatgacaatcagtcagatacgttcggaatgccgttc
ctaccattaccccaggatagcatgagctgtgaagggatggttttgattgcctcacttctc
tgttcttgtatacgcaacgtcaaaatgccacaactaaggaggagtgcggtgcttctcttg
agatcttgttcattatatatagacgatgaagatcggttgcagcgtgtccttccatacgta
atcgctatgctttctgattcagctgcgattgttcgttcagctgccttggagactttatgt
gacattctgcctttggtccgagattttcctcccagtgatgctaaaatcttcccagagtat
attcttccaatgctttccatgcttcctgatgatccggaagaaagtgtgcggatctgttat
gcgggcaacatatcgaagcttgcactaactgcttacggatttttgatccactcaataagc
ttaacagaggcaggagttctgaatgatttaagttccactcagaagtcaggagcatcatcc
catgaaatacccggacgcttgcagagtcagaaaaacgatgcacagcttgcgcagttgagg
aaatccattgctgaggttatacaagaacttgtaatgggtccgaagcaaactccaaacatc
aggagagctctcttgcaggatgtcggcaatctttgttggttttttggtcagaggcaaagc
aatgactttttgttgcccatcctcccggcatttcttaatgaccgggatgagcttctaaga
tcggtgttctttgggcagataatttacgtttgcttctttgttggccatcaaagtgtagag
gaatatcttctaccttatcttgaacaggcattaggagattcaacagaggctgttatagtc
aatgcattggattgcttagccattctgtgcagaagtggttttcttcgcaagagaatactt
cttgagatgatcgagcattccttcccgttgttatgttatccaagccagtgggtaaggagg
tcagtggtaaccttcattacagcaagtagtgagagcttaggtgctgtagattcccatgtt
ttcctcgttccacttattcgcccttttcttcgtcgaatgccagcttctttagcgtctgaa
cgagctcttttttcatgtctaaaaccccccgtgcgcagacagacgttttaccaaatcttg
gaaaagagcaagagttcggatatgttagaaaggcaaaggaagatatggtacaactcatct
gcacaatctaagcaaccggaaaatgtagacatgtaccagaaaggagttggagagttggat
ccaatgaagatgtggtctgataggcaacatgatcttcttggtcatccacctgtaagtagc
attcagccatttgggcttattgaaaatgacaccgaggctaagttgagatcagcgagtagt
ttcgctcgtaatgcttctggtacagttgacatccacgatcccctgttttcagataaaatg
aagttctctggctttatgtcccctcaactaagcgttgtcaacagtttgattggtgataaa
tcatcagaaggcataccattgtactattttaaatacgataaacgagcaactggaaatgct
tcaactgcatctaactcttcattacccatagatcctttaggttctgcttcattatccatg
ccgtggatggatccagttaacaagtcatttacgttgtctagttcagttccttcacctggg
cttgtttctagctcaattagcatcggtaatagttctccacaacttcaccgagtggttcac
gagttggaagacagggaatcggataaaacagcctatctcagcaacaagtttaatgacatg
ggagtttctaattcttcaaaaggaagttctattggaggggctgatagctcccctcctacc
gaggtagcaggattgccatctttttctcgaacaccaacaactccagattcaggttggagg
cctcgtggtgttttagttgcacacctccaggaacaccgttctgccgtcaatgacattgcc
atttcaacagaccaaagctttttcgttactgcatctgacgattctactgttaaggtgtgg
gattcaagaaagttggagaaagatattacttttagatcgaggctaacttattctctagag
ggtagccgagcactatgtactacaatgctccatggctctgcccatgtagttgccggagct
tccgatggcacgatccatacgttctcggttgattatgtctccagaggactcggcaatgtt
gtagaaaagtattctggaattgctgacgttaaaaagagtaacatcggagaaggtgcaatt
ctcaccctcttaaactactctaaagatggcgatgatggtaaaatgattctgtatagcacc
caaaattgcgggatccatctctcagatatgagagaaaattccaactcatggaatacaaaa
gtaattcctgaagagggttatatatctgctcttgtggcaagtccttgtggaaattggttt
gtttctgggtcttctaggggcgtgcttactttatgggatctgagatttggtatacccgtc
tactcatggcaatattcgggtgcatgccctatagagaaaatgtgtctttttgttcctcct
caaagtacatcattatctataacagtgaggccgcttgtatatgctgcagcaggttgtaat
gaagtttctctttggaatgcagaaaatgggagttgtcaccaggtactgaggctggcaaac
agtgacagtgatgctgagatttccgagcttcctcgggctttggctagaccacctagcaaa
acaaattctaaaggagatgcacgcaggagtgcaaatttcaagtacagagtagatgagctg
aatgaacctcctcctcggtcgcctggaatacgctcattgctcccactacccggaggcgat
ttgctaacaggcggaagtgaccttaaaatacgacgatgggatcactacagcccagagaaa
agttattgcatttgtggtccatccatgaagggagttggaaatgatgatctttatgaaaca
aaatctagcttcggggtgcaaatcgtgcaggagacaagaagacggcctttggcaactagg
ttgactggaaaggcggttcttgcagctgctgccaccgattctggtggttgccaccgtgac
tccattctctctttggcttctgtcaaattgaaccagagactattgatctcaagcagtaga
gatggcaccctcaaggtttggaagtag
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