Cynara cardunculus var. scolymus (artichoke): 112517719
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Entry
112517719 CDS
T05604
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112517719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112517719
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
112517719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
112517719
NCBI-ProteinID:
XP_024980873
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Position
LG 1:complement(19081075..19093249)
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AA seq
958 aa
AA seq
DB search
MKTRNQAKRQRQSTGEDDLVSKSGHDTKANGTLADTSEEAVNPFLKRVGSLGSRELKDDS
ASKLDNRPKGKEKQIKYDRHAQNISEVDGSSGHAKLENSIPLKADGRSPQQAKSELEDVM
ADSDWEDGSNPNLNSESSHPGHINKDIAIEFDASPGTSKRKSVRRASAEEKQVAELVHRT
HLLCLLGRGRLIDSACDDPLIQASLLSLLPAELLNLLKVADLTVDALGSLVNWFHINFHV
RSSSSDRSFHSALARALETHEGTPEEVAALSVALFRALNLLTRFVSILDAASLKPDADKS
EDMSQGRKVGKGVFDSSTVMVTQPSEASISSGKQSAPVDAENVASVDKKNASEASAKASY
QRKVKKSGRTISQDTDSTTGDQLNERRVDIFACEAQNPTSDACAATTSEGSKRKGDVEFE
MQMEMALSATAVETSKVNLDTDVKNSHSSISNFSPFKRSKKIRCEESSSFSQGISTAVGS
RKVGAPMYWAEVYCSGDNSTGKWVHVDAVNAIIDGEQKVEAAAAACKTSLRYVVAFAGRG
AKDVTRRYCAKWYMIASHRVDSTWWDTVLRPLKELESRAIGAFGSSSGTCRLSDKSSMSV
IRGDVKKEEHASVSSFFFATRTSLEDMELETKALTEPLPTNQQAYRSHHLYALERWLTKY
QILHPKGPILGFCSGHPVYPRACVQMLHTKERWLREGLQLKVDELPVKVLKRSVKLNKGK
FPGDEDDENDCVGPGGTINLYGKWQTEPLRLLPAENGIVPKNERGQVDLWSEKCLPPGTV
HLGFPRIFAVAKKLEIDYAPAMVGFEFRNGRSVPLYDGIVVCTEFKDTILEAYAEEEERR
GADERRKNEAQAISRWYQLLSSIITRQRLNNRYAEGVSNDVQKTYDTFHHHKSTNREDIQ
KPISHQANEDDPSQPDALPQPSEEDHEHVFLLNDPSSDDGSTRTKRCRCGFSIEVEEF
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccagaaatcaagccaaacgacagcgtcaatcaacaggtgaagatgacttggtt
agcaaatctggacatgatacaaaagcaaatggtactcttgctgatacttcagaggaggct
gtcaacccgtttctaaaacgagttggttcacttggctctcgtgagttgaaagatgattct
gcaagtaagttagacaaccggccaaagggaaaggaaaaacaaattaaatacgacaggcat
gcacaaaatatctcggaggtcgatggttctagtggacatgccaaattagagaattcaata
cctttgaaagctgatggcagaagtcctcagcaagctaaatccgaattggaggatgtaatg
gctgattcagattgggaagatggatcaaatcccaatttgaattctgaaagcagccatcca
ggtcatataaacaaggatattgctattgagtttgatgcatcacctggtacttctaagcgg
aagtctgtacgtcgagcttctgctgaggaaaagcaagtggctgagcttgtgcacaggaca
catttactctgtttacttggacggggacggttaattgatagtgcttgcgatgatcctctc
attcaggcttccttattgtcacttttgccagcagagttgttgaatttattgaaagtcgca
gatcttacagtagatgccttgggttctttggtcaactggttccacattaacttccacgtc
agaagttcaagcagtgacagatccttccattcagctttagccagggcacttgaaacccat
gaggggactccagaggaggtcgctgctttatctgtggcactgttcagagcattgaatctt
ttaacacggtttgtgtctattttagatgctgcctccttgaaaccggatgctgataaatct
gaggatatgtctcaaggaagaaaagttggtaagggggtatttgactcttcaacggtcatg
gtgactcagccaagtgaagcttctatatcttctggtaaacagtctgcacctgttgatgcg
gagaatgttgcttctgttgacaagaagaatgcatctgaagcttctgcaaaggcttcatac
cagaggaaagttaagaagtcaggtcgaactatatctcaggatacagactcaaccactggt
gatcagttaaatgagagaagggtggatatatttgcttgtgaggcacaaaatcctacctct
gatgcatgtgctgcgacaacatctgagggctcaaagagaaagggagatgttgagtttgaa
atgcagatggaaatggctctttctgcaactgcagtggagacttctaaagtcaatcttgat
accgatgttaagaattcgcatagtagtatatccaacttttctccttttaaaagatcaaaa
aagatcagatgtgaagagtcatcttcgttctctcagggaatctctactgcagttggatca
aggaaagtaggagctcctatgtattgggcagaagtttattgcagtggagataactcgaca
ggaaaatgggttcatgttgatgctgtaaatgcaatcattgacggagaacagaaagtagaa
gctgcagctgctgcatgtaaaacctccttgagatatgtggttgcttttgctggtcgagga
gctaaagatgtgactcgcaggtattgtgcaaagtggtacatgatagcatcacatcgagtt
gattcgacttggtgggacacagtgttgcggccactgaaagagttggagtctagagcaatt
ggagcttttggttcttcatcaggcacttgcagattgtctgataagtctagcatgagtgtg
ataaggggtgatgtgaaaaaggaagaacatgcatcagtgagcagtttcttttttgccacc
aggacctctcttgaggatatggagctggagacgaaggcattaactgagcctcttccaact
aatcaacaggcatacagaagtcaccatttgtatgctcttgaaagatggcttacaaaatac
cagattcttcaccctaagggccctattttgggattttgttctggtcatcctgtttaccca
agagcttgcgtccaaatgctgcacaccaaagagagatggctgcgggaggggctgcaatta
aaagttgatgaacttccagtgaaggtgttgaagcgctctgtaaagctaaacaaggggaag
tttcctggagatgaagatgatgagaatgattgtgtagggcctggaggcactatcaatctt
tacggcaagtggcaaacagaacccttgcgtttacttcctgcagaaaatgggattgtgcca
aagaatgagcgtggccaagtagatctgtggtctgagaagtgtcttcctccaggaactgtg
catttggggttcccaaggatctttgctgttgcaaagaagctggagatcgattatgcccct
gcaatggttggatttgaattccgaaatggccgctctgttcctctatatgatggcattgtg
gtgtgtactgagttcaaggatacaattctagaggcatatgcagaagaagaagagaggagg
ggagcagatgagagaagaaagaatgaagcccaagccatatccaggtggtatcaacttctt
tcatccatcattacgcgacaaagattgaacaaccgctacgcagagggagtttcaaatgat
gttcaaaaaacatacgatacatttcatcatcataaaagtacgaatagggaggacatacag
aaaccgatatcccaccaagcaaatgaagacgaccctagtcaacctgacgctctgccacag
ccatcagaagaggaccacgagcatgtgtttttgttgaatgatccaagttctgatgatggt
tccacacggacaaagcgatgtcgttgtgggttttcaattgaagtggaggagttttag
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