Cynara cardunculus var. scolymus (artichoke): 112525155
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Entry
112525155 CDS
T05604
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112525155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112525155
03036 Chromosome and associated proteins [BR:
ccav03036
]
112525155
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112525155
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
112525155
COMPASS/SET1 complex (yeast)
112525155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Cytochrom_D1
PQQ_2
Nup160
HisKA_2
BBS2_Mid
Motif
Other DBs
NCBI-GeneID:
112525155
NCBI-ProteinID:
XP_024990911
LinkDB
All DBs
Position
LG 1:complement(16949019..16955429)
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AA seq
332 aa
AA seq
DB search
MAGGQTDGEDKVSLELTEEIIQSMEVGMAFRDYNGRISSMDFHRTSNYLVTASDDESIRL
YDVANATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HDRVVSLSLCARSEYFISGSLDRTVLLWDQRADKCQGLLRVQGRPATAYDDQGLVFAVAF
GGSIRMFDSRNYEKGPFEIFSVGGDLSDANVVKFSNDGRLMLLTTRDGRIHVLDSFRGTL
LCTYNVKPVLTDSTLEASFSPEGMFVISGSGDGSVYAWSIRSGKEVASWLSTENEPPVIR
WAPGSLMFVTGSSELSFWIPDLSKLAAYVGRK
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtggacaaacggatggagaagacaaggtatcattggagctcacagaagaaatc
attcagagcatggaagtcggaatggcgttccgtgattataatggtaggataagttcaatg
gattttcacagaacgtcaaattatttggtgaccgctagtgatgacgaatccattcggctc
tatgatgtggctaatgcaacatgcttgaagacgattaatagcaaaaagtatggggttgac
ttggtttccttcacttcacaccccacaactgttatatactcctctaagaatggatgggac
gaatctctccggcttctctcgttgcatgacaataagtacttgcgctactttaaaggtcat
catgatagggttgtctcccttagtttatgtgctcggtcagaatactttatctctggttct
cttgatagaactgttctgctctgggatcaaagagctgataaatgtcagggccttttacgt
gtacaaggaagaccagctacagcttatgacgatcaagggcttgtctttgcagttgctttt
ggagggtccataaggatgtttgattctcgcaattatgaaaagggtccttttgaaatattc
tctgttggtggagatctgtctgatgcgaatgttgtcaaatttagtaatgatggtagactt
atgcttttgacaactagggatggccgtattcatgtacttgattcattccgtggcacactt
ttatgcacatataatgtaaagccagtcctaactgattccactttggaggcctcttttagt
cctgagggaatgttcgttatatcaggttcaggtgatggtagtgtctatgcttggagcatt
cgaagtggcaaagaggtggctagttggttgagcactgaaaacgaaccccctgtcataaga
tgggcacctggcagtctaatgtttgttactggttcgtctgaattgtctttttggatccca
gacttgtcgaaactggcagcatatgttggaaggaagtag
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