Caretta caretta (Loggerhead turtle): 125642525
Help
Entry
125642525 CDS
T09292
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04136
Autophagy - other
ccay04140
Autophagy - animal
ccay04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125642525 (ATG16L1)
04136 Autophagy - other
125642525 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
125642525 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccay04131
]
125642525 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
ccay03029
]
125642525 (ATG16L1)
Membrane trafficking [BR:
ccay04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
125642525 (ATG16L1)
Others
Rab GTPases of specific organelles
Auto phagosome
125642525 (ATG16L1)
Mitochondrial biogenesis [BR:
ccay03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125642525 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
ANAPC4_WD40
NBCH_WD40
eIF2A
HEF_HK
AP5B1_middle
Peptidase_M15_4
V_ATPase_I
Lipoprotein_6
CCDC93_CC
Synaptobrevin
Motif
Other DBs
NCBI-GeneID:
125642525
NCBI-ProteinID:
XP_048720018
EnsemblRapid:
ENSCECG00000013638
LinkDB
All DBs
Position
9:complement(47585698..47614091)
Genome browser
AA seq
623 aa
AA seq
DB search
MTSGLRAASFPTWKRHIAEELRRRDRLQRQAFEEIILQYNKLLEKTDLHAVLADKLQAEK
YDLQSRHEISPGHDGTRNEAQLQEMAQLRIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DREMQMNEAKIAEYMQKISELETECQELRSKLQELERANQTLKDEYDALQITFTALEEKL
RKTTEDNQELVTRWMAEKAQEANRLNAENEKDSRRRQAKLQKELAEAAKEPLPVEQDDDI
EVLVDETSDPAEETSPVRAVSRTSSKRLSQPAGGLLDSITNIFGLSESSLLGHHSSDAAR
RRSLSSFPAPQENVDVHPGSSKEVRVPTTAVYVFDAHDGEVNAVQFSPASRLLATGGMDR
RVKLWEVFGDRCELKSSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMS
GHFDKKIRFWDIRTESIVQELELFGRITALDLNPERTELLTCSRDDMLKIIDLRVNAVKQ
TFSAQGFKCGSDWTRVVFSPDGSYVAGGSADGVLYIWNVLTGKVERTLAKHHSSSINAVA
WSPAGAHVVSVDKGNKAVLWSEF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgacttctgggctcagagctgcgagtttccccacgtggaaacgtcacattgcagaggag
ctgaggcgccgggaccggctgcagagacaagcctttgaagagatcatcctccagtataac
aagctgctagagaagactgatctccatgccgtgctggctgataagctgcaagcagaaaag
tatgacttgcaaagcagacatgagatcagtccagggcatgatggcacaaggaatgaagct
caattgcaggaaatggcccagctgaggattaaacatcaagaggagctgacagagctgcat
aagaagcgtggtgagttggcccagtcagtgattgatttgaataatcaaatgcagcagaaa
gacagagagatgcagatgaacgaagcaaagattgcagaatacatgcaaaagatctctgag
ctggaaacagagtgccaggaactgcgcagcaagctgcaagaacttgagcgagccaatcaa
acactgaaggatgagtatgatgctctccagatcaccttcactgccctagaagagaaactg
aggaaaactactgaagacaaccaagagttggtcacacgttggatggcagagaaggctcag
gaagctaatcggctcaatgcagagaatgagaaggactcaaggaggcgacaagccaagttg
cagaaagagttagcggaagctgccaaggaaccactgccagttgaacaggatgatgatatt
gaagtgcttgtggatgaaacttctgacccagctgaagagacttccccagtgcgagctgtc
agccggacatccagtaagcgactgtcccagcctgctggaggccttctggactctatcact
aatatttttggtctatctgagtcttcccttttgggacatcactcttctgatgctgccagg
aggcgctctctgtcctcatttcccgctccccaggaaaatgtagatgtgcatccaggttcc
agtaaagaagtgagagtgcccactactgcagtgtatgtctttgatgcacatgatggagaa
gtgaacgcagtgcaattcagtcctgcttcccggttactagcaacaggaggcatggatcgg
agagttaaactctgggaagtctttggagataggtgtgagctgaaaagttctctctctggc
agtaacgcagggattacgagtatcgaatttgacagtgctggctcctatctcttagcagct
tcaaatgactttgccagcagaatctggactgtagatgactatcggttacggcacacactg
acaggtcacagtgggaaggttttgtcagccaagttcttgctggataatgcacgtatcgtg
tcggggagtcatgaccggaccctcaaactctgggacctgcgcagcaaagtttgtataaaa
acagtatttgcaggatcaagctgcaatgatatagtgtgcacagagcagtgtgtgatgagt
ggacattttgacaagaagattcgcttctgggacatcaggactgagagcatagtgcaggag
ctggaactgtttgggaggatcacagctttagacctgaacccagagagaacagagctcttg
acctgttcccgagatgatatgctgaagatcattgatttgcgagtcaatgctgtcaaacag
actttcagtgcccagggattcaaatgtggatctgactggaccagagttgtgttcagccct
gatggtagctacgtggcaggtggttcagctgatggggtcctgtacatctggaatgtgctc
actgggaaagtggagagaactctcgcaaagcatcacagctcctctatcaatgcagtggca
tggtcaccagccggagcacatgtggtcagtgtggacaaaggaaacaaggctgtcctgtgg
tctgaattttga
DBGET
integrated database retrieval system
